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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDX90932
CDX92973
CDY10349
CDY10694
CDY13521
CDY18013
CDY21896
CDY22060
CDY30781
CDY39073
CDY63910

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12820.1 CDX68112 AT1G75950.1 15992545
AT1G12820.1 CDX73212 AT1G75950.1 15992545
AT1G12820.1 CDX80590 AT1G75950.1 15992545
AT1G12820.1 CDX85931 AT1G75950.1 15992545
AT1G12820.1 CDX87650 AT1G75950.1 15992545
AT1G12820.1 CDY13521 AT1G75950.1 15992545
AT1G12820.1 CDY39073 AT1G75950.1 15992545
AT1G12820.1 CDX92973 AT3G23050.1 15992545
AT1G12820.1 CDY10349 AT3G23050.1 15992545
AT1G12820.1 CDY10694 AT3G23050.1 15992545
AT1G12820.1 CDY30781 AT3G23050.1 15992545
AT1G12820.1 CDY63910 AT3G23050.1 15992545
AT1G12820.1 CDX90932 AT4G02570.1 15992545
AT1G12820.1 CDY18013 AT4G02570.1 15992545
AT1G12820.1 CDY21896 AT4G02570.1 15992545
AT1G12820.1 CDY22060 AT4G02570.1 15992545
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY16034 Canola cytosol 98.79 98.62
CDY26594 Canola cytosol 98.62 98.62
CDY21068 Canola cytosol 91.18 89.32
AT1G12820.1 Thale cress cytosol 88.93 89.08
CDY31282 Canola cytosol 90.14 88.76
CDY34211 Canola cytosol 82.53 82.96
CDY28523 Canola cytosol 82.18 82.61
VIT_14s0068g01330.t01 Wine grape cytosol 74.05 74.83
KRG94665 Soybean cytosol 73.18 73.95
KRH06858 Soybean cytosol 72.66 73.43
KRH70053 Soybean cytosol 70.93 71.55
GSMUA_Achr9P01140_001 Banana cytosol 62.98 68.29
GSMUA_AchrUn_... Banana cytosol 62.8 68.11
GSMUA_Achr6P08000_001 Banana cytosol 62.28 67.54
KRH08397 Soybean cytosol 66.78 67.36
GSMUA_Achr6P16510_001 Banana cytosol 61.76 66.98
GSMUA_Achr10P... Banana cytosol 61.42 66.6
Os04t0395600-01 Rice cytosol 64.19 64.52
Zm00001d003911_P003 Maize cytosol 63.67 64.0
GSMUA_Achr6P20580_001 Banana cytosol 55.02 63.6
HORVU2Hr1G070800.1 Barley cytosol 63.15 63.59
TraesCS2A01G286200.1 Wheat cytosol 63.15 63.59
TraesCS2D01G285000.1 Wheat cytosol 63.15 63.59
TraesCS2B01G302900.1 Wheat cytosol 62.98 63.41
KXG26136 Sorghum cytosol 64.36 62.73
Zm00001d025268_P001 Maize cytosol 62.11 62.65
HORVU6Hr1G021040.2 Barley extracellular 14.71 60.71
Os11t0515500-01 Rice cytosol 57.79 58.8
EES09791 Sorghum cytosol 58.48 58.48
TraesCS5A01G281100.1 Wheat cytosol 57.44 58.35
CDY68868 Canola cytosol 54.5 58.33
TraesCS5B01G280100.1 Wheat cytosol 57.61 58.22
TraesCS5D01G288000.1 Wheat cytosol 57.27 58.17
HORVU5Hr1G075620.2 Barley cytosol 56.75 57.75
CDY53998 Canola cytosol 57.61 57.02
Zm00001d007357_P005 Maize cytosol 55.88 56.37
CDX76680 Canola cytosol 57.61 55.97
CDY53774 Canola cytosol 56.57 55.8
CDY11468 Canola cytosol 57.44 55.8
CDX90899 Canola cytosol 55.88 55.12
CDX67912 Canola endoplasmic reticulum, golgi 57.44 51.47
CDY21947 Canola plastid, vacuole 55.71 51.44
CDY22108 Canola endoplasmic reticulum, golgi, plastid, vacuole 55.71 50.39
CDX89163 Canola cytosol 52.77 48.72
CDY21439 Canola cytosol 50.35 48.18
CDX83172 Canola cytosol, plastid 50.35 47.94
CDY03450 Canola cytosol 48.79 46.23
CDY34286 Canola cytosol 48.44 45.98
CDX97301 Canola cytosol 6.57 41.3
CDY24941 Canola cytosol 31.14 30.51
CDY20501 Canola cytosol 31.66 30.4
CDX74819 Canola cytosol 31.49 30.33
CDX93225 Canola cytosol 30.97 30.13
CDX93223 Canola cytosol 30.62 29.95
CDY07041 Canola cytosol 30.45 29.73
CDY07040 Canola cytosol 30.62 29.16
CDY60996 Canola endoplasmic reticulum, golgi 31.14 25.6
Protein Annotations
Gene3D:1.20.1280.50MapMan:11.2.2.1.1MapMan:19.2.2.8.1.4.6Gene3D:3.80.10.10EnsemblPlants:CDX71968ProteinID:CDX71968
ProteinID:CDX71968.1ncoils:CoilInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00155732001InterPro:IPR001611InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt
PFAM:PF13516PANTHER:PTHR43944PANTHER:PTHR43944:SF9SMART:SM00256SUPFAM:SSF52047UniParc:UPI0004EEA93D
SEG:seg:::::
Description
BnaC08g29060D
Coordinates
chrLK031795:+:1552136..1554982
Molecular Weight (calculated)
65170.8 Da
IEP (calculated)
6.759
GRAVY (calculated)
-0.114
Length
578 amino acids
Sequence
(BLAST)
001: MNYFPDEVIE HIFDFISSHK DRNSISLVSK SWHKIERCSR KRVFIGNCYA INPERLIERF PSLRSLTLKG KPHFADFNLV PHEWGGFVHP WIVALAKARV
101: GLQELRLKRM VVSDESLELL SRSFASFKSL VLVSCEGFTT DGLASVAANC RHLRELDLQE NEIEDHRGQW LNCFPESSTA LTSLNFSCLK GETNLAALER
201: LVARSPNLES LKVNRAVPLD ALTRLMSCAP QLVDLGVGSY ENEPDQESFM KLMAAIKKCT ELRSLSGFSE VAPLCLSAFY PICQNLTSLN LSYAAEIQGN
301: HLIRFIQFCK RLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLHDEE DNDTAVTEIG LVAISAGCPK LHSILYFCKQ MTNAALITVA KNCPNFIRFR
401: LCILEPNKPD HTTSQSLDEG FGAIVQACKG LRRLSVSGLL TDKVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVD
501: KYRTMRSLWM SSCEVTLGGC KRLARNAPWL NVEIINENEN NDLMERNEED EREKVDRLYL YRTVVGARKD APPCVTIL
Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.