Factsheet for VIT_07s0104g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g02110.t01
VIT_04s0023g01280.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_18s0001g14860.t01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	VIT_05s0020g04690.t01	AT1G04250.1	11713520
AT3G62980.1	VIT_05s0020g04690.t01	AT3G23050.1	11713520
AT3G62980.1	VIT_05s0020g04680.t01	AT4G14560.1	15546359
AT3G62980.1	VIT_03s0063g02110.t01	AT4G36800.1	12682009
AT3G62980.1	VIT_04s0023g01280.t01	AT4G36800.1	12682009
AT3G62980.1	VIT_18s0001g14860.t01	AT5G42190.1	10398681
AT3G62980.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT3G62980.1	VIT_18s0001g14860.t01	AT5G42190.1	23226441

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	21.88	85.71
KRH68108	Soybean	cytosol	83.16	81.74
KRG96377	Soybean	cytosol	82.81	81.26
KRH71533	Soybean	cytosol	80.73	79.49
KRH31921	Soybean	cytosol	80.03	78.8
CDY68868	Canola	cytosol	73.78	78.7
AT3G62980.1	Thale cress	cytosol	80.38	77.95
CDY11468	Canola	cytosol	80.03	77.48
CDY53998	Canola	cytosol	78.47	77.4
Bra007720.1-P	Field mustard	cytosol	79.86	77.31
CDX76680	Canola	cytosol	79.69	77.14
Bra003518.1-P	Field mustard	cytosol	78.99	76.6
VIT_14s0030g01240.t01	Wine grape	cytosol	77.08	76.42
CDX67912	Canola	endoplasmic reticulum, golgi	78.99	70.54
GSMUA_Achr5P26930_001	Banana	cytosol	55.73	69.18
GSMUA_Achr3P23850_001	Banana	cytosol	68.23	67.53
CDX89163	Canola	cytosol	72.92	67.09
Bra014378.1-P	Field mustard	cytosol	72.92	67.09
VIT_14s0068g01330.t01	Wine grape	cytosol	63.02	63.46
Os05t0150500-00	Rice	plastid	62.5	61.33
KXG21312	Sorghum	plastid	62.85	61.25
Zm00001d010863_P001	Maize	plastid	62.33	60.85
TraesCS1A01G091300.1	Wheat	cytosol	62.15	60.47
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	61.81	60.44
TraesCS1D01G099900.1	Wheat	cytosol	61.98	59.5
VIT_00s0181g00040.t01	Wine grape	nucleus	57.12	56.43
HORVU1Hr1G021550.4	Barley	cytosol	61.28	54.98
VIT_01s0146g00450.t01	Wine grape	cytosol	50.17	49.83
VIT_18s0001g07120.t01	Wine grape	cytosol	51.22	49.66
VIT_05s0020g00220.t01	Wine grape	cytosol	18.75	45.38
VIT_05s0020g04830.t01	Wine grape	cytosol	18.4	44.54
VIT_13s0019g03380.t01	Wine grape	cytosol	33.68	32.44

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100233127	wikigene:100233127	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10
ProteinID:AAX55705	ProteinID:AAX55705.1	EMBL:AY849387	ProteinID:CCB56773	ProteinID:CCB56773.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	UniProt:F6HQ17	EMBL:FN596005	GO:GO:0000822	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	TIGR:TC62306	EntrezGene:TIR1	wikigene:TIR1
UniParc:UPI00015CAC9E	ArrayExpress:VIT_07s0104g01320	EnsemblPlantsGene:VIT_07s0104g01320	EnsemblPlants:VIT_07s0104g01320.t01	unigene:Vvi.9710	RefSeq:XP_002269127
RefSeq:XP_002269127.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:2351619..2357500

Molecular Weight (calculated)

64615.1 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.062

Length

576 amino acids

Sequence
(BLAST)

001: MAYSFPEEVL EHVFSFIHTD KDRNAISLVC KSWYEVERWS RRRIFIGNCY AVSPGIVIRR FPELRSVALK GKPHFADFNL VPDGWGGNVY PWIAAMAMAY
101: PMLEELRLKR MVVTDESLEL ISRSFKNFKV LVLSSCEGFS TDGLAAIAAN CRNLRELDLR ESEVDDFSGH WLTHFPDSCT SLVSLNISCL ASEVSFSALE
201: RLVGRCPSLR TLRLNRAVPL DRLPNLLRRA PQLVELGTGA YSAEHRPEVF SSLAGAFSNC KELKSLSGFW DVVPDYLPAV YPACSGITSL NLSYATIQSP
301: DLIKLVTQCQ NLQRLWVLDY IEDSGLDALA ASCKDLQELR VFPSEPYDME GNVALTEQGL VSVSEGCPKL HSVLYFCRQM TNAALVSIAK NRPNMTRFRL
401: CIIEPRTRDY QTLEPLDVGF GAIVEHCKEL HRLSLSGLLT DRVFEYIGTH AKKLEMLSVA FAGDGDLGLH HVLSGCKSLR KLEIRDCPFG DKALLANAAK
501: LETMRSLWMS SCSVSFGACK LLGQKMPRLN VEVMDERGRP DSRPESCSVE KLYIYRSVAG PRSDMPRFVW TMKTPS

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.