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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000156.1-P
Bra000874.1-P
Bra003735.1-P
Bra003778.1-P
Bra005000.1-P
Bra006010.1-P
Bra006246.1-P
Bra006326.1-P
Bra008172.1-P
Bra008231.1-P
Bra009354.1-P
Bra015801.1-P
Bra015880.1-P
Bra017044.1-P
Bra017045.1-P
Bra022254.1-P
Bra023453.1-P
Bra025713.1-P
Bra032760.1-P
Bra033654.1-P
Bra035336.1-P
Bra035858.1-P
Bra036257.1-P
Bra038444.1-P
Bra038607.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39940.1 Bra025713.1-P AT1G19180.1 17637677
AT2G39940.1 Bra025713.1-P AT1G19180.1 18547396
AT2G39940.1 Bra003778.1-P AT1G74950.1 18547396
AT2G39940.1 Bra008172.1-P AT1G74950.1 18547396
AT2G39940.1 Bra015880.1-P AT1G74950.1 18547396
AT2G39940.1 Bra003735.1-P AT1G75950.1 12172031
AT2G39940.1 Bra008231.1-P AT1G75950.1 12172031
AT2G39940.1 Bra015801.1-P AT1G75950.1 12172031
AT2G39940.1 Bra003735.1-P AT1G75950.1 12445118
AT2G39940.1 Bra008231.1-P AT1G75950.1 12445118
AT2G39940.1 Bra015801.1-P AT1G75950.1 12445118
AT2G39940.1 Bra003735.1-P AT1G75950.1 14749489
AT2G39940.1 Bra008231.1-P AT1G75950.1 14749489
AT2G39940.1 Bra015801.1-P AT1G75950.1 14749489
AT2G39940.1 Bra000156.1-P AT2G39940.1 12724535
AT2G39940.1 Bra005000.1-P AT2G39940.1 12724535
AT2G39940.1 Bra017044.1-P AT2G39940.1 12724535
AT2G39940.1 Bra017045.1-P AT2G39940.1 12724535
AT2G39940.1 Bra022254.1-P AT3G17860.1 17637675
AT2G39940.1 Bra022254.1-P AT3G17860.1 18547396
AT2G39940.1 Bra022254.1-P AT3G17860.1 19309455
AT2G39940.1 Bra000874.1-P AT4G02570.1 12172031
AT2G39940.1 Bra036257.1-P AT4G02570.1 12172031
AT2G39940.1 Bra000874.1-P AT4G02570.1 12445118
AT2G39940.1 Bra036257.1-P AT4G02570.1 12445118
AT2G39940.1 Bra000874.1-P AT4G02570.1 12724535
AT2G39940.1 Bra036257.1-P AT4G02570.1 12724535
AT2G39940.1 Bra032760.1-P AT4G14110.1 12724535
AT2G39940.1 Bra038444.1-P AT4G14110.1 12724535
AT2G39940.1 Bra006010.1-P AT5G08590.1 12172031
AT2G39940.1 Bra009354.1-P AT5G08590.1 12172031
AT2G39940.1 Bra006010.1-P AT5G08590.1 14749489
AT2G39940.1 Bra009354.1-P AT5G08590.1 14749489
AT2G39940.1 Bra006246.1-P AT5G14250.1 12724535
AT2G39940.1 Bra006326.1-P AT5G14250.1 12724535
AT2G39940.1 Bra023453.1-P AT5G14250.1 12724535
AT2G39940.1 Bra033654.1-P AT5G42970.1 12724535
AT2G39940.1 Bra035336.1-P AT5G42970.1 12724535
AT2G39940.1 Bra035858.1-P AT5G63110.1 12445118
AT2G39940.1 Bra038607.1-P AT5G63110.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24941 Canola cytosol 99.49 99.49
Bra005000.1-P Field mustard cytosol 92.37 90.38
AT2G39940.1 Thale cress cytosol 89.66 89.36
CDY60996 Canola endoplasmic reticulum, golgi 99.83 83.78
Bra017044.1-P Field mustard cytosol 81.86 79.97
Bra017045.1-P Field mustard cytosol 80.17 77.92
KRH31107 Soybean cytosol 69.66 69.66
KRG97777 Soybean cytosol 68.98 68.98
VIT_13s0019g03380.t01 Wine grape cytosol 69.83 68.9
KRH14993 Soybean cytosol 66.27 68.84
KRH73146 Soybean cytosol 67.8 68.49
Solyc05g052620.2.1 Tomato cytosol 68.14 66.67
GSMUA_Achr6P33630_001 Banana cytosol, mitochondrion, nucleus 63.22 63.98
GSMUA_Achr5P28930_001 Banana cytosol 59.83 63.04
GSMUA_Achr9P03690_001 Banana cytosol 63.39 62.02
HORVU4Hr1G060950.3 Barley cytosol 56.1 56.48
GSMUA_Achr8P02350_001 Banana cytosol 16.44 56.4
Os01t0853400-01 Rice cytosol 56.78 56.3
Zm00001d042833_P001 Maize cytosol 56.95 56.19
TraesCS4A01G091200.1 Wheat cytosol 55.76 56.14
TraesCS4B01G213500.1 Wheat cytosol 55.76 56.14
TraesCS3A01G367500.1 Wheat cytosol 52.88 56.01
HORVU1Hr1G073230.1 Barley cytosol 56.1 56.01
TraesCS4D01G214200.1 Wheat cytosol 55.59 55.97
Os05t0449500-01 Rice cytosol 56.61 55.95
Zm00001d012338_P001 Maize cytosol 56.44 55.87
EES18318 Sorghum cytosol 56.61 55.76
TraesCS3B01G399200.1 Wheat cytosol 56.1 55.72
HORVU3Hr1G085210.2 Barley cytosol 56.1 55.72
TraesCS3D01G360400.2 Wheat cytosol 56.1 55.63
TraesCS1D01G278400.1 Wheat cytosol 55.59 55.41
EES01769 Sorghum cytosol 55.93 55.37
Zm00001d038273_P001 Maize cytosol 56.1 55.26
Zm00001d010082_P001 Maize cytosol 56.1 55.26
TraesCS1B01G288100.1 Wheat cytosol 55.42 55.24
TraesCS1A01G279100.1 Wheat cytosol 55.08 54.9
Os03t0265500-01 Rice plasma membrane 54.75 54.84
EER95129 Sorghum cytosol 54.41 54.31
Zm00001d028543_P001 Maize cytosol 53.9 53.81
Zm00001d047848_P001 Maize cytosol 53.73 53.64
Bra003518.1-P Field mustard cytosol 32.03 31.82
Bra032954.1-P Field mustard cytosol 30.68 31.48
Bra026953.1-P Field mustard cytosol 30.51 31.14
Bra007720.1-P Field mustard cytosol 31.19 30.92
Bra016754.1-P Field mustard cytosol 30.17 30.17
Bra000842.1-P Field mustard cytosol 29.66 29.86
Bra034191.1-P Field mustard cytosol 29.49 29.74
Bra000604.1-P Field mustard cytosol, plastid 30.0 29.16
Bra013798.1-P Field mustard cytosol 29.83 29.0
Bra014378.1-P Field mustard cytosol 29.83 28.11
Protein Annotations
EnsemblPlants:Bra000156.1EnsemblPlants:Bra000156.1-PEnsemblPlantsGene:Bra000156Gene3D:1.20.1280.50Gene3D:3.80.10.10InterPro:IPR032675
InterPro:LRR_dom_sfPANTHER:PTHR43944PANTHER:PTHR43944:SF6SEG:segSUPFAM:SSF52047UniParc:UPI0002540251
UniProt:M4C7H8MapMan:11.7.2.1.1::::
Description
AT2G39940 (E=4e-307) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase
Coordinates
chrA03:-:9606079..9608687
Molecular Weight (calculated)
67221.7 Da
IEP (calculated)
5.984
GRAVY (calculated)
-0.197
Length
590 amino acids
Sequence
(BLAST)
001: MEDPDIKKCR LSSVTVDDVI EQVMPYITDP KDRDSASLVC RRWFEIDSET REHVTMALCY TSTPDRLSRR FPNLRSIKLK GKPRAAMFNL IPENWGGFVT
101: PWVNEIASSL RRLKSVHFRR MIVSDLDLDV LAKARLDELE ALKLDKCSGF STDGLFSIVK HCRKMKTLLM EESSFVEKDG NWLHELALHN TSLEVLNFYM
201: TEFAKINAKD LESIARNCRS LVSVKIGDFE MLELVGFFKA ATNLEEFCGG SLNEEIGRPE KYMNLTFPPK LCCLGLSYMG PNEMPILFPF AAQIRKLDLI
301: YALLATEDHC TLIQKCPNLE VLETRNVIGD RGLEVLGQCC KKLKRLRIER GEDEQGMEDE EGLVSQRGLV ALAQGCQELE YMAVYVSDIT NESLESIGTY
401: LKNLCDFRLV LLDQEERITD LPLDNGVRSL LIGCKKLRRF AFYLRQGGLT DVGLSYIGQY SPNVRWMLLG YVGESDEGLM EFSRGCPKLQ KLEMRGCCFS
501: ERAIAAAVLK IPSLRYLWVQ GYRASTTGQD LRLMSRPYWN IELIPARKVP EVNQLGEVRE MEHPAHILAY YSLAGERTDC PPTVKVLREA
Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.