Factsheet for VIT_18s0001g13930.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_04s0008g05560.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_09s0002g05150.t01
VIT_12s0035g01800.t01
VIT_15s0046g00290.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT1G19850.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT1G19850.1	VIT_18s0001g13930.t01	AT1G19850.1	14729917
AT1G19850.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT1G19850.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT1G19850.1	VIT_18s0001g13930.t01	AT1G19850.1	24485461
AT1G19850.1	VIT_09s0002g05150.t01	AT1G52830.1	14729917
AT1G19850.1	VIT_12s0035g01800.t01	AT1G59750.1	22096563
AT1G19850.1	VIT_09s0002g05150.t01	AT3G15540.1	14729917
AT1G19850.1	VIT_09s0002g05150.t01	AT3G15540.1	22096563
AT1G19850.1	VIT_05s0020g04690.t01	AT3G23050.1	21734647
AT1G19850.1	VIT_15s0046g00290.t01	AT3G61830.1	22096563
AT1G19850.1	VIT_05s0020g04680.t01	AT4G14560.1	14729917
AT1G19850.1	VIT_05s0020g04680.t01	AT4G14560.1	22096563
AT1G19850.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT1G19850.1	VIT_04s0008g05560.t01	AT4G32280.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025775.1-P	Field mustard	nucleus	39.45	80.0
KRH05923	Soybean	nucleus	68.0	69.45
KRH17404	Soybean	nucleus	67.37	69.03
PGSC0003DMT400009660	Potato	nucleus	65.48	67.17
Solyc04g081240.2.1	Tomato	nucleus	65.37	66.99
Bra016492.1-P	Field mustard	nucleus	56.87	64.83
CDY62586	Canola	nucleus	57.19	64.42
CDX83741	Canola	nucleus	56.98	64.18
CDY01393	Canola	nucleus	57.92	63.81
CDY61164	Canola	nucleus	57.61	63.76
Bra012190.1-P	Field mustard	nucleus	57.92	63.67
AT1G19850.1	Thale cress	nucleus	60.13	63.53
CDY29392	Canola	nucleus	57.92	63.01
CDY39348	Canola	nucleus	57.71	62.57
GSMUA_Achr1P20040_001	Banana	nucleus	45.86	55.88
GSMUA_Achr6P36980_001	Banana	nucleus	46.27	51.4
Os04t0664400-01	Rice	nucleus	45.12	46.74
TraesCS2D01G491200.2	Wheat	nucleus	45.96	45.86
TraesCS2B01G519200.2	Wheat	nucleus	45.86	45.76
EES13038	Sorghum	nucleus	45.33	45.67
TraesCS2A01G491000.1	Wheat	nucleus	45.75	45.65
HORVU2Hr1G109650.18	Barley	nucleus	45.54	45.35
Zm00001d001945_P002	Maize	nucleus	44.81	45.04
Zm00001d026540_P002	Maize	nucleus	44.7	44.42
GSMUA_Achr1P20000_001	Banana	nucleus	43.55	42.74
VIT_10s0003g04100.t01	Wine grape	nucleus	39.87	41.85
VIT_12s0028g01170.t01	Wine grape	nucleus	40.29	41.42
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	42.71	38.76
VIT_11s0065g00310.t01	Wine grape	nucleus	43.02	36.77
VIT_18s0089g00910.t01	Wine grape	nucleus	24.97	36.67
VIT_04s0079g00200.t01	Wine grape	nucleus	26.97	36.35
VIT_12s0035g01800.t01	Wine grape	nucleus	25.29	35.55
VIT_11s0016g00640.t01	Wine grape	nucleus	42.5	35.06
VIT_15s0046g00290.t01	Wine grape	nucleus	25.08	34.05
VIT_02s0025g01740.t01	Wine grape	nucleus	23.71	33.14
VIT_07s0104g01230.t01	Wine grape	nucleus	23.5	32.18
VIT_06s0004g03130.t01	Wine grape	nucleus	26.02	31.08
VIT_01s0244g00150.t01	Wine grape	nucleus	24.87	30.82
VIT_17s0000g00320.t01	Wine grape	nucleus	27.6	30.51

Protein Annotations

EntrezGene:100254074	wikigene:100254074	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CCB46019	ProteinID:CCB46019.1	InterPro:DNA-bd_pseudobarrel_sf
UniProt:F6H071	EMBL:FN595227	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733
GO:GO:0009734	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009942
GO:GO:0009987	GO:GO:0010051	GO:GO:0010305	GO:GO:0016020	GO:GO:0042802	GO:GO:0044212
GO:GO:0048364	GO:GO:0048507	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100254074
wikigene:LOC100254074	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
TIGR:TC56309	UniParc:UPI0002109A69	ArrayExpress:VIT_18s0001g13930	EnsemblPlantsGene:VIT_18s0001g13930	EnsemblPlants:VIT_18s0001g13930.t01	unigene:Vvi.1321
RefSeq:XP_003634381	RefSeq:XP_003634381.1	RefSeq:XP_003634382	RefSeq:XP_003634382.1	SEG:seg	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6H071]

Coordinates

chr18:-:11920505..11928962

Molecular Weight (calculated)

105001.0 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.402

Length

953 amino acids

Sequence
(BLAST)

001: MMSSVEENIK AGGLVSGTQT TLIEEMKLLK EMQDQSGPRK AINSELWHAC AGPLVSLPQV GSLVYYFPQG HSEQVAVSTK RTATSQIPNY PNLPSQLMCQ
101: VHNVTLHADK DTDEIYAQMS LQPVNSEKDI FPIPDFGLKP SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS MQPPTQELIV RDLHDITYTF
201: RHIYRGQPKR HLLTTGWSVF VSAKRLRAGD AVLFIRDEKS QLLLGVRRAN RQQTSLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RHAFFLACPS
301: EFVIPLAKYR KSVYGTQISV GMRFGMMFET EESGKRRYMG TIVGISDLDP LSWPGSKWRN LQVEWDESGC GDKQSRVSSW EIETPESLFI FPSLTSSLKR
401: PMHAGFLGGE AEWGSLMKRP FIRVLENGNG VLPYPTIPNI CSEQLMKMLL KPQLVNPPGT LTPAFQDSGV KAASLQEARI IEGMIKQQPP PIPSENKLLQ
501: NQNHPQPCLD QPDATNSDLP SQPNLVGQVQ PLNKLENQTP SGNAEKSNIE PVHTADQLSQ LTSTGQGDEE KLAKSPKNPQ NLVNQPSLSN QNKDPLQLQT
601: NSFMQPHLES SIFHAQQISA PPFDSNPNAL SPYIDTDEWI LYPSANQSFG GVLRSPGPLS TFSLQDPSVV FPEAINPTLP SMGQEIWDHQ LNNAKCLSQA
701: DQLPPFPQQD PCSLNCISSS SGLRDLSDDS NNQSGIYSCL NFDVSNGGST VVDPSVSSTI LDEFCTFKDA DFPDPSDCLV GNFSTSQDVQ SQITSVSLAD
801: SQAFSRPDFL DNSGGTSSSN VDFDESSLLQ NSSWQQVAPP PMRTYTKVQK MGSVGRSIDV ASFKNYEELC SAIECMFGLE GLLNDQKGSG WKLVYVDYEN
901: DVLLVGDDPW KEFVGCVRCI RILSPSEVQQ MSEEGMQLLN STAIEGINDS IRR

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.