Factsheet for VIT_12s0028g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006350.1.1	Tomato	nucleus	17.37	86.56
Solyc07g043620.2.1	Tomato	nucleus	47.36	83.62
KRH73577	Soybean	nucleus	74.22	76.79
KRH14545	Soybean	nucleus	73.57	76.12
VIT_10s0003g04100.t01	Wine grape	nucleus	73.89	75.44
PGSC0003DMT400041127	Potato	nucleus	69.58	72.31
PGSC0003DMT400074169	Potato	nucleus	66.99	70.25
VIT_04s0079g00200.t01	Wine grape	nucleus	42.83	56.15
GSMUA_Achr1P08230_001	Banana	mitochondrion	35.38	49.4
VIT_18s0001g13930.t01	Wine grape	nucleus	41.42	40.29
VIT_18s0089g00910.t01	Wine grape	nucleus	27.08	38.67
VIT_11s0065g00310.t01	Wine grape	nucleus	46.06	38.3
VIT_12s0035g01800.t01	Wine grape	nucleus	27.72	37.91
VIT_11s0016g00640.t01	Wine grape	nucleus	46.82	37.58
VIT_15s0046g00290.t01	Wine grape	nucleus	26.75	35.33
VIT_02s0025g01740.t01	Wine grape	nucleus	25.89	35.19
VIT_07s0104g01230.t01	Wine grape	nucleus	26.11	34.77
VIT_01s0244g00150.t01	Wine grape	nucleus	28.26	34.07
VIT_17s0000g00320.t01	Wine grape	nucleus	30.53	32.83
VIT_06s0004g03130.t01	Wine grape	nucleus	26.54	30.83

Protein Annotations

EntrezGene:100260866	wikigene:100260866	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CCB47435	ProteinID:CCB47435.1	ncoils:Coil
InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6H567	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100260866	wikigene:LOC100260866	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF68	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002109AA0	ArrayExpress:VIT_12s0028g01170
EnsemblPlantsGene:VIT_12s0028g01170	EnsemblPlants:VIT_12s0028g01170.t01	RefSeq:XP_002282830	RefSeq:XP_002282830.2	SEG:seg	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6H567]

Coordinates

chr12:-:1746684..1765641

Molecular Weight (calculated)

102997.0 Da

IEP (calculated)

6.645

GRAVY (calculated)

-0.486

Length

927 amino acids

Sequence
(BLAST)

001: MRLSSSGFAH QTEEGEKKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LAPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLSPQEQKEV CLLPAELGSP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHGNEWKF RHIFRGQPKR HLLTTGWSVF
201: VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTIMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYAKAVYH TRVSVGMRFR
301: MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPS ALPSFHAHKD GDMSINSPLM
401: WLRGDIGDQG IQSLNFQGYG LTPWMQPRLD ASMLGLQSNM QQAIAAASLQ ELRALDPSKH PAQSLLQFQQ PQNVSNSPAS VFRGQMLQQT QSQHAFLQSF
501: QENPPQAQAQ AQAQAHAHAH AQAHAQAQAQ AQLLQQQLQG RQALSNQQQQ QQLQQQQQQQ HHQQQQQQQQ HQQQQPQLQQ PQQLHRQLSD QQHIPKVISA
601: LSQLSSPTQS LPPSLQTIPS PIQQQIFPDS VGNPITTSDV STMQSLLGSF SQDGTSHLLN LHGSNPVISS SAFFPKQVAV EPPLPSGTTQ CVLPQVEELA
701: TPPSNASELS TLLPPFPGRE YSVYQGVADP QNNLLFGVNI DSSSLMLQNG MSNLRSIGSE NDSVSMPFST PNFANAPGTD FPLNSDMTTS SCIDESGFLQ
801: SSENLEQVNP PTRTFVKVHK LGSFGRSLDI TKFSSYDELR GELGRMFGLE GRLEDPLRSG WQLVFVDREN DVLLLGDDPW QEFVNNVWYI KILSPLEVQQ
901: MGKEGINVPN PIPSHRISNS GNSCDDY

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.