Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g006350.1.1 | Tomato | nucleus | 31.62 | 89.25 |
| PGSC0003DMT400041127 | Potato | nucleus | 97.14 | 57.17 |
| VIT_12s0028g01170.t01 | Wine grape | nucleus | 83.62 | 47.36 |
| KRH73577 | Soybean | nucleus | 80.57 | 47.21 |
| KRH14545 | Soybean | nucleus | 79.43 | 46.54 |
| Solyc02g037530.2.1 | Tomato | nucleus | 70.1 | 43.71 |
| GSMUA_Achr1P08230_001 | Banana | mitochondrion | 55.24 | 43.67 |
| Solyc03g031970.2.1 | Tomato | nucleus | 69.9 | 43.48 |
| Solyc01g103050.2.1 | Tomato | nucleus | 39.43 | 31.65 |
| Solyc04g081240.2.1 | Tomato | nucleus | 51.62 | 29.14 |
| Solyc08g082630.2.1 | Tomato | nucleus | 34.29 | 27.95 |
| Solyc08g008380.2.1 | Tomato | nucleus | 35.43 | 27.23 |
| Solyc01g096070.2.1 | Tomato | nucleus | 35.62 | 27.14 |
| Solyc07g016180.2.1 | Tomato | nucleus | 56.76 | 26.8 |
| Solyc05g047460.2.1 | Tomato | nucleus | 55.81 | 26.71 |
| Solyc07g042260.2.1 | Tomato | nucleus | 56.57 | 26.12 |
| Solyc12g042070.1.1 | Tomato | nucleus | 39.81 | 25.24 |
| Solyc03g118290.2.1 | Tomato | nucleus | 40.19 | 24.94 |
| Solyc11g069190.1.1 | Tomato | nucleus | 36.76 | 23.8 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:K4CEL9 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF3 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:Solyc07g043620.2 | EnsemblPlants:Solyc07g043620.2.1 | UniParc:UPI000276C5DE | SEG:seg | : | : |
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4CEL9]
Coordinates
chr7:-:57561281..57566695
Molecular Weight (calculated)
58650.3 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.347
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVSSSGFNP QPEEAAGEKK CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSVQVAASTN KEVDAHIPNY PGLPPQLICQ LHNLTMHADV ETDEVYAQMT
101: LQPLSPQEQK DVCLLPAELG IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW KLRHIFRGQP KRHLLTTGWS
201: VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTLMPS SVLSSDSMHI GLLAAAAHAT ATNTRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR
301: FRMLFETEES SVRRYMGTIT GISDLDPVCW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNVGLTMNSP
401: LSWLRGDMGD QGMQSLNFQG FGATPFMQPR MDASMLGLQP DILQTMTALD PSKLANQSLM QFQHSIPNSS APLSQIQMLQ PSHSQHNLIQ GFSENHLISQ
501: AQMLQQQLQR RQNFNDQQQL LQPQL
101: LQPLSPQEQK DVCLLPAELG IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD YSQQPPCQEL IAKDLHGNEW KLRHIFRGQP KRHLLTTGWS
201: VFVSAKRLVA GDAVIFIWNE NNQLLLGIRR ANRPQTLMPS SVLSSDSMHI GLLAAAAHAT ATNTRFTIFY NPRASPSEFV IPLAKYAKAV YHTRISVGMR
301: FRMLFETEES SVRRYMGTIT GISDLDPVCW PNSHWRSVKV GWDESTAGER QPRVSLWEIE PLTTFPMYPS PFSLRLKRPW PSGLPSLPGF PNVGLTMNSP
401: LSWLRGDMGD QGMQSLNFQG FGATPFMQPR MDASMLGLQP DILQTMTALD PSKLANQSLM QFQHSIPNSS APLSQIQMLQ PSHSQHNLIQ GFSENHLISQ
501: AQMLQQQLQR RQNFNDQQQL LQPQL
001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY
Arabidopsis Description
ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.