Factsheet for VIT_07s0104g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96367	Soybean	nucleus	47.13	48.45
KRH68102	Soybean	nucleus	40.52	47.8
VIT_12s0035g01800.t01	Wine grape	nucleus	40.37	41.45
VIT_18s0089g00910.t01	Wine grape	nucleus	38.22	40.99
VIT_02s0025g01740.t01	Wine grape	nucleus	37.79	38.56
VIT_01s0244g00150.t01	Wine grape	nucleus	42.1	38.1
VIT_17s0000g00320.t01	Wine grape	nucleus	47.13	38.05
VIT_15s0046g00290.t01	Wine grape	nucleus	37.21	36.89
VIT_06s0004g03130.t01	Wine grape	nucleus	34.05	29.7
VIT_10s0003g04100.t01	Wine grape	nucleus	35.06	26.87
VIT_12s0028g01170.t01	Wine grape	nucleus	34.77	26.11
VIT_18s0001g13930.t01	Wine grape	nucleus	32.18	23.5
VIT_04s0079g00200.t01	Wine grape	nucleus	23.56	23.2
VIT_11s0065g00310.t01	Wine grape	nucleus	35.06	21.88
VIT_11s0016g00640.t01	Wine grape	nucleus	33.76	20.35

Protein Annotations

EntrezGene:100246055	wikigene:100246055	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:CBI32272	ProteinID:CBI32272.3	UniProt:D7TP49
InterPro:DNA-bd_pseudobarrel_sf	EMBL:FN596005	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100246055	wikigene:LOC100246055	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF25
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0001BE3F67	ArrayExpress:VIT_07s0104g01230	EnsemblPlantsGene:VIT_07s0104g01230
EnsemblPlants:VIT_07s0104g01230.t01	RefSeq:XP_002270286	RefSeq:XP_002270286.2	RefSeq:XP_019076425.1	SEG:seg	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:D7TP49]

Coordinates

chr7:-:2256656..2262296

Molecular Weight (calculated)

77701.7 Da

IEP (calculated)

5.509

GRAVY (calculated)

-0.438

Length

696 amino acids

Sequence
(BLAST)

001: MGSGGDGERM RVDLEGDGLQ SKNIQDENDD LYTELWLGCA GPLVNILRAG QKVVYFPQGH IEQVEAYTNQ DGQMEMPIYN LPSKIFCKVV YVQLKAEACT
101: DEVFAQVTLL PEAKQEWQSP DHGNSQFFPR RTHSYSFSKT LTPSDTNTHG GFSVPKRHAD ECLPPLDMTQ QPPVQELIAK DLHGTEWRFR HIFRGQPKRH
201: LLTSGWSQFV TSKKLVAGDA CIFLRGANGE LRVGVRRATR LQNNVSASVL SGHSMQHGIL ASAFHAISTG TMFTVYFRPW TSPEFIIPYD QYIKSAENNY
301: SVGTRFRMLF EGEECSQQRC AGTIVGIEDV DAIRWPNSEW RRFKVQWDTS DITPCPERVA AWNIEPIEFI KKKHTSILPQ LKRARPTDPL CPAIPILVGD
401: VEHTKIQSGV LQGQENDDIG AHKPDTSKLP SLLVVPPPNS DWGPQHFPMH DPFYQCPGKT ILFQGENPLS SGIANGCSLT FTYCGACDNV GGSRNLSFAN
501: LDSSNCEFQD WRALEPKGNE ASFAQQNRID KFKLFGVNLI NSPAELPSPQ VASSSELQSP CSIPPTSQSS ISESIQASEP SKSVSGDLSD KQCKNCCSVM
601: VRSCTKVLKY GTALGRSIDL ARFDGYDELI IELDQMFDFG GSLMDGSCRW HVTYTDDEGD MMLLGDYPWQ EFRSMVQRIF ICPKEETERL NSATPS

Best Arabidopsis Sequence Match ( AT1G59750.1 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.