Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G161900.1 | Wheat | nucleus | 99.16 | 99.25 |
| TraesCS7B01G065800.2 | Wheat | plastid | 98.12 | 96.76 |
| HORVU7Hr1G033820.5 | Barley | nucleus | 93.15 | 93.15 |
| Os06t0196700-02 | Rice | nucleus | 86.4 | 87.3 |
| KXG19536 | Sorghum | nucleus | 83.96 | 85.0 |
| Zm00001d045026_P002 | Maize | nucleus | 83.11 | 84.14 |
| GSMUA_Achr3P10240_001 | Banana | nucleus | 35.08 | 60.32 |
| GSMUA_Achr9P18170_001 | Banana | nucleus | 46.81 | 58.43 |
| CDX83778 | Canola | nucleus | 50.66 | 52.94 |
| CDX96672 | Canola | nucleus | 50.19 | 52.45 |
| Bra016517.1-P | Field mustard | nucleus | 49.34 | 52.08 |
| CDY26690 | Canola | nucleus | 50.75 | 51.57 |
| Bra025720.1-P | Field mustard | nucleus | 50.75 | 51.57 |
| CDY41030 | Canola | nucleus | 50.94 | 51.32 |
| AT1G19220.1 | Thale cress | nucleus | 52.16 | 51.2 |
| KRH37536 | Soybean | nucleus | 53.94 | 51.11 |
| KRH12587 | Soybean | nucleus | 53.56 | 50.89 |
| VIT_11s0016g00640.t01 | Wine grape | nucleus | 54.6 | 50.39 |
| KRH02575 | Soybean | nucleus | 53.28 | 50.0 |
| KRH19355 | Soybean | nucleus | 52.91 | 49.87 |
| Solyc07g042260.2.1 | Tomato | nucleus | 52.72 | 49.43 |
| CDX92437 | Canola | nucleus | 48.22 | 49.42 |
| PGSC0003DMT400006151 | Potato | nucleus | 52.63 | 48.49 |
| Bra020125.1-P | Field mustard | nucleus | 49.81 | 48.27 |
| TraesCS2A01G547800.1 | Wheat | nucleus | 37.62 | 48.26 |
| TraesCS7A01G461700.1 | Wheat | nucleus | 41.09 | 48.18 |
| AT5G20730.1 | Thale cress | nucleus | 51.03 | 46.7 |
| CDY45069 | Canola | nucleus | 48.69 | 46.63 |
| CDY16560 | Canola | nucleus | 45.5 | 46.55 |
| TraesCS5A01G038300.2 | Wheat | nucleus | 38.18 | 45.27 |
| TraesCS6A01G138600.4 | Wheat | nucleus | 39.12 | 44.94 |
| TraesCS7A01G252000.2 | Wheat | nucleus | 43.62 | 42.78 |
| TraesCS6A01G113000.1 | Wheat | nucleus | 45.12 | 42.38 |
| TraesCS7A01G416400.1 | Wheat | nucleus | 45.87 | 41.69 |
| Bra002327.1-P | Field mustard | nucleus | 49.06 | 36.34 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 32.27 | 36.02 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 21.95 | 35.78 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 24.86 | 33.25 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 24.39 | 31.36 |
| TraesCS3A01G159200.1 | Wheat | nucleus | 21.2 | 29.78 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF21 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS7A01G160800 | EnsemblPlants:TraesCS7A01G160800.1 |
| TIGR:cd10017 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:116872033..116877869
Molecular Weight (calculated)
118569.0 Da
IEP (calculated)
6.361
GRAVY (calculated)
-0.600
Length
1066 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKDQESAGVS PGPPEAGEKK AINSELWHAC SGPLVAMPPV GSLVVYFPQG HSEQVAASMH KEVDIIPNYP SLPSKLICKL LSLTLHADSE TDEVYAQMTL
0101: QPVNKYDRDA MLASELGLKQ NKQPVEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFT MQPPAQELMA KDLHDIPWKF RHIFRGQPKR HLLTTGWSVF
0201: VSTKRLLAGD SVLFIRDEKS QLLLGIRRAT RPQPALSSSV LSSDSMHIGI LAAAAHAAAN SSPFTIFYNP RASPSEFVIP LAKYNKALYT QVSLGMRFRM
0301: LFETEDSGVR RYMGTITGIG DLDPVRWKNS HWRNLQVGWD ESTASERRTR VSIWEIEPVA TPFYICPPPF FRPKLPKQPG MPDDEGEVDS AFKRAMPWLG
0401: DDFALKDVQS QLFPGLSLVQ WMAMQQNPQM LPAGAPAVQA PYLNSSAMAM QDGMGTGNDD LMRRFNMQSQ NISLPNSQVG SKMDHAAMAQ HQQQSHQLQQ
0501: QQQVQQSQQS SAVQQQQAQL LQQNAIHLQQ QQEHLQRQQS LPQQQQEHLQ RQQSQPQQQL KTAASMPSME QHKLREQQPQ GGQAVSQAQM LSQIFQPSSS
0601: QLQQLGLPKS PTQRPGFPGL PTASSLQQPA LGQAPQVQQA AEYQQALLQS QQQQLQQLSQ PEMQLQLLQK IQQQNMLSQL NPQHQSQLMQ QLSQKNQEYL
0701: QQQILQHQLS GSDAMVQFKQ SHQTPSNNIT GSLTPQQLAR SHSALAESED PSSSTAPSAN RLSPMNSLSR THQGSRNLTD MTTSPHIDNL LQEIQSKPDN
0801: RNKNDLQSSK ETIPVPNRYP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DSNAQVDPRD NFLIAENVDS LMPDALLSRG MGSGKDICNL PSGQRDHREV
0901: DNELSSAAFS SQSFGVPDIS FKPGCSGDIA VNDGGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY TNYDELRHDL ACMFGIQGQL EDPYRMDWKL
1001: VYVDHENDIL LVGDDPWEEF VSCVKSIKIL SSVEVQQMSL DGDLGGIPSQ TQACSASDDA NAWRGS
0101: QPVNKYDRDA MLASELGLKQ NKQPVEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFT MQPPAQELMA KDLHDIPWKF RHIFRGQPKR HLLTTGWSVF
0201: VSTKRLLAGD SVLFIRDEKS QLLLGIRRAT RPQPALSSSV LSSDSMHIGI LAAAAHAAAN SSPFTIFYNP RASPSEFVIP LAKYNKALYT QVSLGMRFRM
0301: LFETEDSGVR RYMGTITGIG DLDPVRWKNS HWRNLQVGWD ESTASERRTR VSIWEIEPVA TPFYICPPPF FRPKLPKQPG MPDDEGEVDS AFKRAMPWLG
0401: DDFALKDVQS QLFPGLSLVQ WMAMQQNPQM LPAGAPAVQA PYLNSSAMAM QDGMGTGNDD LMRRFNMQSQ NISLPNSQVG SKMDHAAMAQ HQQQSHQLQQ
0501: QQQVQQSQQS SAVQQQQAQL LQQNAIHLQQ QQEHLQRQQS LPQQQQEHLQ RQQSQPQQQL KTAASMPSME QHKLREQQPQ GGQAVSQAQM LSQIFQPSSS
0601: QLQQLGLPKS PTQRPGFPGL PTASSLQQPA LGQAPQVQQA AEYQQALLQS QQQQLQQLSQ PEMQLQLLQK IQQQNMLSQL NPQHQSQLMQ QLSQKNQEYL
0701: QQQILQHQLS GSDAMVQFKQ SHQTPSNNIT GSLTPQQLAR SHSALAESED PSSSTAPSAN RLSPMNSLSR THQGSRNLTD MTTSPHIDNL LQEIQSKPDN
0801: RNKNDLQSSK ETIPVPNRYP VSDQLDASSA TSFCLDESPR EGFSFPPVCL DSNAQVDPRD NFLIAENVDS LMPDALLSRG MGSGKDICNL PSGQRDHREV
0901: DNELSSAAFS SQSFGVPDIS FKPGCSGDIA VNDGGMPSQG LWNNQTQRMR TFTKVQKRGS VGRSIDITRY TNYDELRHDL ACMFGIQGQL EDPYRMDWKL
1001: VYVDHENDIL LVGDDPWEEF VSCVKSIKIL SSVEVQQMSL DGDLGGIPSQ TQACSASDDA NAWRGS
0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR
Arabidopsis Description
ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.