Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026166.1-P | Field mustard | nucleus | 98.17 | 98.17 |
| CDY39608 | Canola | cytosol | 96.34 | 96.34 |
| AT1G15050.1 | Thale cress | nucleus | 62.8 | 55.68 |
| CDY37364 | Canola | cytosol, nucleus, plastid | 20.73 | 47.22 |
| CDY17689 | Canola | cytosol | 53.66 | 46.32 |
| CDX77807 | Canola | nucleus | 53.05 | 46.28 |
| KRG90903 | Soybean | nucleus | 45.73 | 39.47 |
| KRH35895 | Soybean | nucleus | 45.12 | 38.74 |
| VIT_01s0011g04070.t01 | Wine grape | nucleus | 45.73 | 37.13 |
| Solyc05g008850.2.1 | Tomato | nucleus | 41.46 | 36.17 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078HFG2 | UniProt:A0A078HFG2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY36527 | ProteinID:CDY36527 | ProteinID:CDY36527.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00062203001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF29 | SUPFAM:SSF54277 | UniParc:UPI0004EEAB6D |
Description
BnaA06g09800DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFG2]
Coordinates
chrLK032378:-:20938..22205
Molecular Weight (calculated)
18891.4 Da
IEP (calculated)
7.114
GRAVY (calculated)
-0.680
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MECGSVIDLG LSLRTIQHEP YHTSGQSVGE YREVADELKS NRGEFLQKRH ETRNGRCGKE CGSNEGGRKK WGYVKVTMDG FVVGRKVCVL DHGGHSTLAH
101: QLEDMFGMQS VTGLRLFERE SEFSLVYKDK EGTWRNAEDV SWKELVENVE RLRITRRNDF LLFF
101: QLEDMFGMQS VTGLRLFERE SEFSLVYKDK EGTWRNAEDV SWKELVENVE RLRITRRNDF LLFF
001: MYCSDPPHPL HLVASDKQQK DHKLILSWKK PTMDSDPLGV FPNSPKYHPY YSQTTEFGGV IDLGLSLRTI QHEIYHSSGQ RYCSNEGYRR KWGYVKVTMD
101: GLVVGRKVCV LDHGSYSTLA HQLEDMFGMQ SVSGLRLFQM ESEFCLVYRD EEGLWRNAGD VPWNEFIESV ERLRITRRND AVLPF
101: GLVVGRKVCV LDHGSYSTLA HQLEDMFGMQ SVSGLRLFQM ESEFCLVYRD EEGLWRNAGD VPWNEFIESV ERLRITRRND AVLPF
Arabidopsis Description
IAA34Auxin-responsive protein IAA34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5X0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.