Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18205 | Canola | cytosol, nucleus, plastid | 73.18 | 70.48 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 72.8 | 70.11 |
| Bra015289.1-P | Field mustard | nucleus | 72.41 | 69.74 |
| AT1G04550.2 | Thale cress | cytosol | 36.4 | 39.75 |
| AT4G28640.2 | Thale cress | cytosol, nucleus, plastid | 44.44 | 38.41 |
| AT2G33310.2 | Thale cress | nucleus | 36.02 | 38.06 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 20.69 | 34.18 |
| AT3G62100.1 | Thale cress | plastid | 21.84 | 33.14 |
| AT5G25890.1 | Thale cress | nucleus | 21.46 | 32.0 |
| AT2G46990.1 | Thale cress | plastid | 21.07 | 31.43 |
| AT1G51950.1 | Thale cress | nucleus | 28.35 | 27.72 |
| AT3G16500.1 | Thale cress | nucleus | 26.82 | 26.02 |
| AT4G32280.1 | Thale cress | cytosol | 20.31 | 21.12 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | PDB:5C7E | EntrezGene:839290 | UniProt:A0A178W8Y8 | ProteinID:AAC16750.1 |
| ProteinID:AEE27656.1 | EMBL:AF332396 | ArrayExpress:AT1G04100 | EnsemblPlantsGene:AT1G04100 | RefSeq:AT1G04100 | TAIR:AT1G04100 |
| RefSeq:AT1G04100-TAIR-G | EnsemblPlants:AT1G04100.1 | TAIR:AT1G04100.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 |
| GO:GO:0009987 | GO:GO:0010200 | Symbol:IAA10 | InterPro:IPR000270 | RefSeq:NP_171906.1 | ProteinID:OAP14231.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0025022 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF48 | UniProt:Q38828 | SUPFAM:SSF54277 | EMBL:U18412 |
| UniParc:UPI0000126698 | SEG:seg | : | : | : | : |
Description
IAA10Auxin-responsive protein IAA10 [Source:UniProtKB/Swiss-Prot;Acc:Q38828]
Coordinates
chr1:+:1059470..1061209
Molecular Weight (calculated)
27880.0 Da
IEP (calculated)
6.043
GRAVY (calculated)
-0.246
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGLQEVCSS SGSVMIGLPA EEDENAAHSS EDSSCPDESV SETELDLALG LSIGRRKVRS SLSSSSSSLT RESGTKRSAD SSPAAASNAT RQVAVGWPPL
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.