Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G191400.1 | Wheat | nucleus | 89.09 | 91.59 |
| TraesCS3B01G217100.1 | Wheat | nucleus | 86.67 | 91.37 |
| TraesCS3A01G187800.1 | Wheat | nucleus | 88.79 | 90.15 |
| Os01t0274800-01 | Rice | nucleus | 57.88 | 72.08 |
| Zm00001d040423_P001 | Maize | nucleus | 59.7 | 66.11 |
| Zm00001d008251_P002 | Maize | nucleus | 59.39 | 65.55 |
| EES02758 | Sorghum | nucleus | 60.0 | 65.35 |
| EES02759 | Sorghum | nucleus | 50.0 | 58.51 |
| GSMUA_Achr6P15900_001 | Banana | nucleus | 40.3 | 48.36 |
| Zm00001d040426_P001 | Maize | nucleus | 39.09 | 46.4 |
| Bra039036.1-P | Field mustard | nucleus | 26.97 | 46.11 |
| GSMUA_Achr10P... | Banana | nucleus | 41.82 | 45.39 |
| GSMUA_Achr9P04990_001 | Banana | nucleus | 41.52 | 45.36 |
| GSMUA_Achr9P17000_001 | Banana | nucleus | 40.61 | 44.08 |
| GSMUA_Achr5P27750_001 | Banana | nucleus | 33.64 | 44.05 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 30.91 | 41.98 |
| GSMUA_Achr10P... | Banana | nucleus | 40.61 | 41.74 |
| GSMUA_Achr3P09490_001 | Banana | nucleus | 40.3 | 41.69 |
| AT5G39700.1 | Thale cress | nucleus | 23.03 | 40.0 |
| GSMUA_Achr6P32250_001 | Banana | nucleus | 41.82 | 39.88 |
| CDY44415 | Canola | nucleus | 30.61 | 38.7 |
| HORVU4Hr1G017040.2 | Barley | nucleus | 32.42 | 38.49 |
| Bra025652.1-P | Field mustard | nucleus | 29.09 | 37.07 |
| CDY67808 | Canola | nucleus | 17.27 | 35.85 |
| CDY20004 | Canola | nucleus | 30.91 | 35.54 |
| CDY30264 | Canola | nucleus | 27.88 | 35.38 |
| Bra033078.1-P | Field mustard | nucleus | 30.61 | 35.31 |
| CDY66025 | Canola | nucleus | 30.3 | 34.72 |
| AT3G29020.2 | Thale cress | nucleus | 31.52 | 34.1 |
| CDY66170 | Canola | nucleus | 30.91 | 32.48 |
| HORVU3Hr1G096010.6 | Barley | nucleus | 34.85 | 30.1 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 35.76 | 29.95 |
| CDX74436 | Canola | nucleus | 28.79 | 26.32 |
| HORVU6Hr1G035470.1 | Barley | nucleus | 22.73 | 25.34 |
| HORVU7Hr1G116750.3 | Barley | nucleus | 22.12 | 24.83 |
| HORVU4Hr1G077230.1 | Barley | nucleus | 20.0 | 23.66 |
| HORVU7Hr1G116760.1 | Barley | mitochondrion | 23.94 | 22.19 |
| HORVU1Hr1G060030.1 | Barley | nucleus | 19.39 | 19.16 |
| HORVU5Hr1G049880.1 | Barley | plastid | 23.33 | 18.16 |
| HORVU3Hr1G085570.1 | Barley | plastid | 23.33 | 16.7 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G038700.2 | EnsemblPlantsGene:HORVU3Hr1G038700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF473 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00029508ED | UniProt:M0YN92 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:224755603..224758001
Molecular Weight (calculated)
36144.7 Da
IEP (calculated)
7.787
GRAVY (calculated)
-0.748
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREMNGFFS HPPPPAPAPA PYQEEQEEAV ADVDEAEDGS GGQGKLCSRG HWRPAEDARL KELVGQYGPQ NWNLIAEKLD GRSGKSCRLR WFNQLDPRIN
101: RRAFTEEEED RLMAAHRAYG NKWALIARLF PGRTDNAVKN HWHVLMARRQ REQSGAFRRR SKPASSSSSS IAPAPHYPAV VLQHQHQHQY QLHGHGASPM
201: PLQPFAMGVA IASGVYSKPA TASRAYSGGE SDESASTCTT DLSLSSGSAA VPCFYHHHHH QGYDMSPQAH AVAQAFAASP RSAFSAPSSS SARQQQRRQQ
301: QYEEEASGAA GQDGDKLSVP FFDFLGVGST
101: RRAFTEEEED RLMAAHRAYG NKWALIARLF PGRTDNAVKN HWHVLMARRQ REQSGAFRRR SKPASSSSSS IAPAPHYPAV VLQHQHQHQY QLHGHGASPM
201: PLQPFAMGVA IASGVYSKPA TASRAYSGGE SDESASTCTT DLSLSSGSAA VPCFYHHHHH QGYDMSPQAH AVAQAFAASP RSAFSAPSSS SARQQQRRQQ
301: QYEEEASGAA GQDGDKLSVP FFDFLGVGST
001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
Arabidopsis Description
MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.