Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G173800.1 | Wheat | nucleus | 97.64 | 96.98 |
| TraesCS6D01G162900.1 | Wheat | nucleus | 97.3 | 96.97 |
| TraesCS6B01G201700.1 | Wheat | nucleus | 95.27 | 96.25 |
| Zm00001d015614_P001 | Maize | nucleus | 85.47 | 83.22 |
| Os02t0187700-00 | Rice | nucleus | 82.09 | 80.73 |
| EES04668 | Sorghum | nucleus | 86.15 | 77.98 |
| HORVU7Hr1G116750.3 | Barley | nucleus | 60.14 | 60.54 |
| HORVU7Hr1G116760.1 | Barley | mitochondrion | 64.53 | 53.65 |
| CDX83109 | Canola | nucleus | 27.03 | 49.38 |
| CDY43567 | Canola | nucleus | 31.08 | 42.4 |
| HORVU4Hr1G077230.1 | Barley | nucleus | 31.42 | 33.33 |
| HORVU5Hr1G049880.1 | Barley | plastid | 46.96 | 32.78 |
| HORVU1Hr1G060030.1 | Barley | nucleus | 33.11 | 29.34 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 21.28 | 25.93 |
| HORVU4Hr1G017040.2 | Barley | nucleus | 22.97 | 24.46 |
| HORVU3Hr1G038700.2 | Barley | nucleus | 25.34 | 22.73 |
| HORVU3Hr1G085570.1 | Barley | plastid | 30.41 | 19.52 |
| HORVU3Hr1G096010.6 | Barley | nucleus | 20.61 | 15.97 |
| CDX83108 | Canola | cytosol | 2.03 | 15.38 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G035470.1 | EnsemblPlantsGene:HORVU6Hr1G035470 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF926 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0002966F3F | UniProt:M0YXY7 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:171520645..171523251
Molecular Weight (calculated)
31781.3 Da
IEP (calculated)
8.512
GRAVY (calculated)
-0.626
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ VERRPFTAEE DAAILRAHAR LGNRWAAIAR LLPGRTDNAV
101: KNHWNSSLKR KLATATGGTA WEEASDSGDS PRPCKRASPG PESPTGSDRS ELSHGSGQVF RPVPRPGGFD AISADVRPPP PRQDEDPITS LSLSLPGLDH
201: GFHHDSARSH FQELSPSPRS PSPPPAPQPS SSSYPFSGHL VAAMQEMIRA EVCKYMSGVG LPAGCGAGAV GEACIPQLVE GVMRAAAERV GVMTRQ
101: KNHWNSSLKR KLATATGGTA WEEASDSGDS PRPCKRASPG PESPTGSDRS ELSHGSGQVF RPVPRPGGFD AISADVRPPP PRQDEDPITS LSLSLPGLDH
201: GFHHDSARSH FQELSPSPRS PSPPPAPQPS SSSYPFSGHL VAAMQEMIRA EVCKYMSGVG LPAGCGAGAV GEACIPQLVE GVMRAAAERV GVMTRQ
001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
Arabidopsis Description
MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.