Factsheet for GSMUA_Achr6P02580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23290_001	Banana	nucleus	44.35	51.99
GSMUA_Achr3P16490_001	Banana	nucleus	24.58	51.79
GSMUA_Achr11P...	Banana	nucleus	26.55	51.37
GSMUA_Achr9P29090_001	Banana	nucleus	28.25	47.62
GSMUA_Achr3P07700_001	Banana	nucleus	26.55	45.85
GSMUA_Achr9P15750_001	Banana	nucleus	27.12	45.5
GSMUA_Achr5P27750_001	Banana	nucleus	31.92	44.84
GSMUA_Achr6P15900_001	Banana	nucleus	33.05	42.55
GSMUA_Achr11P...	Banana	nucleus	33.05	42.55
GSMUA_Achr3P18970_001	Banana	nucleus	31.07	41.98
GSMUA_Achr10P...	Banana	nucleus	35.59	41.45
GSMUA_Achr6P17630_001	Banana	nucleus	30.51	41.06
GSMUA_Achr9P08480_001	Banana	nucleus	29.66	41.02
GSMUA_Achr10P...	Banana	nucleus	29.38	40.0
CDY67868	Canola	nucleus	33.33	39.6
GSMUA_Achr9P04990_001	Banana	nucleus	33.62	39.4
Bra003995.1-P	Field mustard	nucleus	33.05	39.39
CDY07345	Canola	nucleus	33.05	39.26
CDY40941	Canola	nucleus	34.46	38.12
CDX95921	Canola	nucleus	34.46	38.12
Bra004394.1-P	Field mustard	nucleus	34.46	38.12
GSMUA_Achr10P...	Banana	nucleus	34.46	38.01
GSMUA_Achr9P17000_001	Banana	nucleus	32.49	37.83
VIT_01s0026g02600.t01	Wine grape	nucleus	48.59	37.64
GSMUA_Achr3P09490_001	Banana	nucleus	33.62	37.3
CDY50737	Canola	nucleus	36.16	37.21
AT1G69560.2	Thale cress	nucleus	36.16	36.99
Bra016285.1-P	Field mustard	nucleus	36.16	36.26
CDY44993	Canola	nucleus	36.16	36.26
CDY46444	Canola	nucleus	36.16	36.26
KRH50566	Soybean	nucleus	44.35	36.01
AT1G26780.2	Thale cress	nucleus	36.44	35.93
GSMUA_Achr6P32250_001	Banana	nucleus	34.18	34.97
Solyc05g007870.1.1	Tomato	nucleus	39.83	33.81
KRH74887	Soybean	plastid	44.35	33.76
KRG89586	Soybean	nucleus	46.33	33.74
KRH70748	Soybean	nucleus	43.79	33.19
PGSC0003DMT400047415	Potato	nucleus	40.11	33.1
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	42.37	31.91
GSMUA_Achr6P33470_001	Banana	nucleus	19.21	30.22
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	33.05	29.7
VIT_14s0108g01010.t01	Wine grape	nucleus	38.42	28.57
GSMUA_Achr4P20150_001	Banana	nucleus	20.62	27.14
GSMUA_Achr4P12950_001	Banana	nucleus	20.34	27.07
GSMUA_Achr1P26140_001	Banana	nucleus	20.9	26.24
GSMUA_Achr1P09750_001	Banana	nucleus	21.47	25.59
GSMUA_Achr3P28230_001	Banana	nucleus	20.34	25.0
GSMUA_Achr3P13070_001	Banana	nucleus	20.34	24.83
GSMUA_AchrUn_...	Banana	nucleus	19.77	24.73
GSMUA_Achr9P22600_001	Banana	nucleus	20.06	24.65
GSMUA_Achr4P09450_001	Banana	nucleus	20.62	24.17
GSMUA_Achr8P25220_001	Banana	nucleus	19.77	23.65
GSMUA_Achr9P03720_001	Banana	nucleus	20.62	22.67
GSMUA_Achr5P28780_001	Banana	nucleus	19.49	17.38

Protein Annotations

EnsemblPlants:GSMUA_Achr6P02580_001	EnsemblPlants:GSMUA_Achr6T02580_001	EnsemblPlantsGene:GSMUA_Achr6G02580_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF473	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000295B7B3	UniProt:M0T3K6	MapMan:15.5.2.1	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G02580_001]

Coordinates

chr6:+:1686852..1688456

Molecular Weight (calculated)

39376.0 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.573

Length

354 amino acids

Sequence
(BLAST)

001: MASRCYADSS PSSSAKGVPS QTDSLSFNTA SSVERHHCGC CTLPFMESCL SLQENAQQNS EVSHDKYLLG ENTTVGSGAA ESGQSKSCAR GHWRPAEDSK
101: LKELVELYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRPFTEEEE EKLMTAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSFACRR
201: RKLSQAVHRR FEEVAAARAT AARGFGSSHS SPSFPSRTPL DSFSGTYALL TSSSTSSAPP LLSSLLFPAA YASFHAEPFM VFGQHSPLSL SMQQSTHLSH
301: VSANETPFEE NSESSHLDAA ASPTFIDFLG LEKLGAKRIE RPRCQHREED TIVV

Best Arabidopsis Sequence Match ( AT1G69560.1 )
(BLAST)

001: MEMVHADVAS LSITPCFPSS LSSSSHHHYN QQQHCIMSED QHHSMDQTTS SDYFSLNIDN AQHLRSYYTS HREEDMNPNL SDYSNCNKKD TTVYRSCGHS
101: SKASVSRGHW RPAEDTKLKE LVAVYGPQNW NLIAEKLQGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL MQAHRLYGNK WAMIARLFPG RTDNSVKNHW
201: HVIMARKFRE QSSSYRRRKT MVSLKPLINP NPHIFNDFDP TRLALTHLAS SDHKQLMLPV PCFPGYDHEN ESPLMVDMFE TQMMVGDYIA WTQEATTFDF
301: LNQTGKSEIF ERINEEKKPP FFDFLGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.