Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059999 | Potato | nucleus | 90.77 | 90.77 |
| Bra029293.1-P | Field mustard | nucleus | 12.0 | 32.1 |
| AT1G43950.1 | Thale cress | nucleus | 10.77 | 31.53 |
| CDX81024 | Canola | cytosol | 3.23 | 30.43 |
| Solyc11g013480.1.1 | Tomato | nucleus | 14.15 | 26.9 |
| Zm00001d023704_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 10.31 | 23.84 |
| Solyc02g077560.2.1 | Tomato | nucleus | 23.54 | 20.48 |
| Bra015374.1-P | Field mustard | nucleus | 12.92 | 19.49 |
| Solyc10g086130.1.1 | Tomato | nucleus | 17.69 | 18.23 |
| Solyc09g007810.2.1 | Tomato | nucleus | 18.92 | 17.72 |
| Solyc11g069500.1.1 | Tomato | nucleus | 18.92 | 17.6 |
| Solyc06g075150.2.1 | Tomato | nucleus | 17.85 | 17.29 |
| Solyc11g013470.1.1 | Tomato | cytosol, nucleus, vacuole | 6.31 | 12.09 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.40.330.10 | InterPro:Auxin_resp | InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:K4C2S9 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF17 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:Solyc05g056040.2 | EnsemblPlants:Solyc05g056040.2.1 | UniParc:UPI0002767452 | : | : | : |
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4C2S9]
Coordinates
chr5:-:65422556..65428132
Molecular Weight (calculated)
74236.0 Da
IEP (calculated)
5.406
GRAVY (calculated)
-0.438
Length
650 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDQLRFSQQ KYLNHMPFKG DDDLCREIWK ACSGSLLDVS KAGERVYYFP RLHVEQLEQS SNQELIEKLQ LSNLPPKILC RVLHIRLLVE HETEEVYAET
101: ILIPNQDQNE PTAADFSPLD NPRPQFQSFC KCLTQSDIKS NWGLSVPLKD AVKCFPPLDM RQEKPCQELI AKDLKGNEWR FKHAHQGQPR RHSLTNGWST
201: FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQHCSVGAS TFSRQSMEVV LAVASHAFAT KSLFFVYQKP CYNKSSQFIM SMSKYFEGGN HGIGVGMISR
301: MQIESEDYCH VRRTNDLEQI SLSQSQQTTN FMLEEDQYMQ DSEAVLDCAQ STMIDLEIRQ QTIGSLNNIH CFAPVEDNGL QLHAAVAREN NEGSIPKDTV
401: STHTRDEDLY ELFKDFDFPD STNTSLDTIA LDLGSDWFRS TLQEQEETVT PSQPNASEDH SRRTSSVLEH PNSFRVMSIS SNPSQIPYEG PGRGDEQVPW
501: GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE ILAELVYFLD NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFSMESLLQ
601: RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNSPM RLQSVLEGLL
101: ILIPNQDQNE PTAADFSPLD NPRPQFQSFC KCLTQSDIKS NWGLSVPLKD AVKCFPPLDM RQEKPCQELI AKDLKGNEWR FKHAHQGQPR RHSLTNGWST
201: FVTSKKLLAG DLVVFLRDET GKLHVGIRRL SYQHCSVGAS TFSRQSMEVV LAVASHAFAT KSLFFVYQKP CYNKSSQFIM SMSKYFEGGN HGIGVGMISR
301: MQIESEDYCH VRRTNDLEQI SLSQSQQTTN FMLEEDQYMQ DSEAVLDCAQ STMIDLEIRQ QTIGSLNNIH CFAPVEDNGL QLHAAVAREN NEGSIPKDTV
401: STHTRDEDLY ELFKDFDFPD STNTSLDTIA LDLGSDWFRS TLQEQEETVT PSQPNASEDH SRRTSSVLEH PNSFRVMSIS SNPSQIPYEG PGRGDEQVPW
501: GGYQVARRTL PILSRVVSRY PDSLVNFRVA SSILQSVYLE ILAELVYFLD NLTIVNLSKD QFNVARQHIW DLKLSGIEIG WLENRLLHID EVFSMESLLQ
601: RRQALTRRME ETFKQLDGEL GCIDKELHEL SLKVGPNSPM RLQSVLEGLL
001: MANVEADFRT SGSNDDELYT ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVASTNQGVV DQEIPVFNLP PKILCRVLSV TLKAEHETDE VYAQITLQPE
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V
Arabidopsis Description
ARF11Auxin response factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.