Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P17120_001 | Banana | plastid | 88.41 | 88.41 |
| KRG91274 | Soybean | nucleus, plastid | 74.4 | 75.86 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 74.4 | 75.49 |
| EER93246 | Sorghum | plastid | 72.95 | 75.12 |
| Solyc06g054260.1.1 | Tomato | plastid | 74.88 | 74.52 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 73.43 | 74.51 |
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 74.4 | 74.4 |
| Os08t0560900-01 | Rice | extracellular, plastid | 72.95 | 74.38 |
| KRH35533 | Soybean | plastid | 75.36 | 74.29 |
| TraesCS5D01G468400.1 | Wheat | plastid | 72.95 | 74.02 |
| TraesCS5B01G466700.1 | Wheat | plastid | 72.95 | 73.66 |
| TraesCS5A01G457500.1 | Wheat | plastid | 72.95 | 73.66 |
| Zm00001d034543_P001 | Maize | plastid | 70.53 | 73.37 |
| AT1G03130.1 | Thale cress | plastid | 71.01 | 72.06 |
| AT4G02770.1 | Thale cress | plastid | 70.05 | 69.71 |
| Zm00001d013039_P001 | Maize | plastid | 70.53 | 61.86 |
| CDY22079 | Canola | plastid | 44.44 | 61.33 |
| CDY21916 | Canola | plastid | 71.5 | 52.67 |
| Bra036240.1-P | Field mustard | plastid | 70.53 | 52.33 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 61.35 | 46.35 |
Protein Annotations
| MapMan:1.1.4.2.4 | Gene3D:3.30.1470.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009538 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | EnsemblPlantsGene:GSMUA_Achr5G14780_001 | EnsemblPlants:GSMUA_Achr5P14780_001 | EnsemblPlants:GSMUA_Achr5T14780_001 | UniProt:M0SYK7 | PFAM:PF02531 |
| PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 | InterPro:PsaD | InterPro:PsaD_sf | SUPFAM:SSF64234 | UniParc:UPI0002951B4C |
| SEG:seg | : | : | : | : | : |
Description
Photosystem I reaction center subunit II, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G14780_001]
Coordinates
chr5:+:10711159..10711994
Molecular Weight (calculated)
22633.4 Da
IEP (calculated)
10.286
GRAVY (calculated)
-0.481
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMSTQTSLF TPPTTIPFSK PAAPPALLPC KQTPGARQLR GASLRVSATE EKKTAAPEAP EAPAGFTPPQ LDPNTPSPIF GGSTGGLLRK AQVEEFYVIT
101: WDSPKEQVFE MPTGGAAIMR QGPNLLKLAR KEQCLALGTR LRSKYKIKYQ FYRVFPNGEV QYLHPKDGVY PEKVNPGRQG VGQNMRSIGK NVSPIEVKFT
201: GKQVYDL
101: WDSPKEQVFE MPTGGAAIMR QGPNLLKLAR KEQCLALGTR LRSKYKIKYQ FYRVFPNGEV QYLHPKDGVY PEKVNPGRQG VGQNMRSIGK NVSPIEVKFT
201: GKQVYDL
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
Arabidopsis Description
PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.