Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 11
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| cytosol:
22313117
extracellular: 22313117 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g054260.1.1 | Tomato | plastid | 98.55 | 98.08 |
| KRG91274 | Soybean | nucleus, plastid | 82.61 | 84.24 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 82.61 | 83.82 |
| KRH35533 | Soybean | plastid | 81.64 | 80.48 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 78.26 | 79.41 |
| Os08t0560900-01 | Rice | extracellular, plastid | 75.36 | 76.85 |
| EER93246 | Sorghum | plastid | 73.91 | 76.12 |
| Zm00001d034543_P001 | Maize | plastid | 72.46 | 75.38 |
| AT1G03130.1 | Thale cress | plastid | 73.91 | 75.0 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 74.4 | 74.4 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 73.91 | 73.91 |
| TraesCS5D01G468400.1 | Wheat | plastid | 71.98 | 73.04 |
| TraesCS5A01G457500.1 | Wheat | plastid | 71.98 | 72.68 |
| TraesCS5B01G466700.1 | Wheat | plastid | 71.98 | 72.68 |
| AT4G02770.1 | Thale cress | plastid | 72.95 | 72.6 |
| CDY22079 | Canola | plastid | 46.38 | 64.0 |
| Zm00001d013039_P001 | Maize | plastid | 72.46 | 63.56 |
| Bra036240.1-P | Field mustard | plastid | 73.43 | 54.48 |
| CDY21916 | Canola | plastid | 72.95 | 53.74 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 63.77 | 48.18 |
Protein Annotations
| MapMan:1.1.4.2.4 | EntrezGene:102601295 | Gene3D:3.30.1470.10 | EMBL:AJ556864 | ProteinID:CAD89270 | ProteinID:CAD89270.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 |
| GO:GO:0009538 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | PFAM:PF02531 |
| EnsemblPlantsGene:PGSC0003DMG400011816 | PGSC:PGSC0003DMG400011816 | EnsemblPlants:PGSC0003DMT400030843 | PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 | InterPro:PsaD |
| InterPro:PsaD_sf | UniProt:Q70PN9 | SUPFAM:SSF64234 | UniParc:UPI00001C1A84 | RefSeq:XP_006356675.1 | SEG:seg |
Description
Photosystem I reaction centre PSI-D subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400011816]
Coordinates
chr6:-:40606589..40607358
Molecular Weight (calculated)
22807.5 Da
IEP (calculated)
10.169
GRAVY (calculated)
-0.437
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMATQASLF TPALSVPKST APWKQSLLSF STPKQLKSTV SVTRPIRAMA EEAPAATEEK PAPAGFTPPQ LDPNTPSPIF GGSTGGLLRK AQVEEFYVIT
101: WESPKEQIFE MPTGGAAIMR EGPNLLKLAR KEQCLALGTR LRSKYKINYQ FYRVFPNGEV QYLHPKDGVY PEKVNPGREG VGQNFRSIGK NKSAIEVKFT
201: GKQVYDI
101: WESPKEQIFE MPTGGAAIMR EGPNLLKLAR KEQCLALGTR LRSKYKINYQ FYRVFPNGEV QYLHPKDGVY PEKVNPGREG VGQNFRSIGK NKSAIEVKFT
201: GKQVYDI
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
Arabidopsis Description
PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.