CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
plasma membrane 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91274
KRH08061
KRH26360
KRH28804
KRH35533
KRH69775
KRH75043

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	KRH26360	AT1G60950.1	18243102
AT4G22890.1	KRG91274	AT4G02770.1	18243102
AT4G22890.1	KRH35533	AT4G02770.1	18243102
AT4G22890.1	KRH08061	AT5G66190.1	18243102
AT4G22890.1	KRH28804	AT5G66190.1	18243102
AT4G22890.1	KRH69775	AT5G66190.1	18243102
AT4G22890.1	KRH75043	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26378	Soybean	plasma membrane	42.72	91.22
KRH57278	Soybean	plastid	82.59	81.31
Zm00001d034904_P001	Maize	plastid	54.43	75.11
KRH04003	Soybean	plastid	78.16	74.4
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	65.82	73.76
VIT_02s0025g04710.t01	Wine grape	plastid	74.37	72.09
CDX90812	Canola	plastid	72.47	71.56
Bra000757.1-P	Field mustard	plastid	72.47	71.56
CDY51552	Canola	plastid	71.84	70.94
PGSC0003DMT400058521	Potato	plastid	71.52	70.62
PGSC0003DMT400032525	Potato	plastid	70.57	69.91
AT4G11960.1	Thale cress	plastid	68.67	69.33
Solyc08g080050.2.1	Tomato	plastid	67.09	68.83
Bra013653.1-P	Field mustard	plastid	68.99	68.34
CDY41285	Canola	plastid	68.99	68.34
Bra019349.1-P	Field mustard	plastid	68.67	67.81
CDX94134	Canola	plastid	68.67	67.81
CDY68977	Canola	plastid	68.67	67.81
Solyc08g007770.2.1	Tomato	plastid	65.82	67.75
CDY10819	Canola	plastid	68.35	67.71
AT4G22890.1	Thale cress	plastid	68.99	67.28
GSMUA_Achr2P12240_001	Banana	plastid	66.46	66.46
Zm00001d034900_P001	Maize	plastid	65.82	64.6
Os03t0857400-01	Rice	plasma membrane	64.87	63.27
KXG34948	Sorghum	plastid	65.51	62.35
TraesCS5D01G569800.1	Wheat	plastid	63.61	62.04
Os08t0526300-02	Rice	plastid	64.24	61.7
Zm00001d019454_P001	Maize	plastid	64.87	61.19
TraesCS4A01G319000.1	Wheat	plastid	62.66	60.92
TraesCS5B01G560400.1	Wheat	plastid	62.66	60.92
HORVU5Hr1G124210.2	Barley	plastid	62.66	60.74
KXG37086	Sorghum	plastid	63.29	49.26
Os08t0310500-00	Rice	plastid	12.34	29.77

Protein Annotations

EMBL:ACUP02000673	EnsemblPlants:KRH77457	EnsemblPlantsGene:GLYMA_01G214300	EntrezGene:100785186	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:KRH77457	ProteinID:KRH77457.1	ProteinID:KRH77458.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00023374FB	UniProt:I1JA15	MapMan:1.1.6.1.2	:

Description

hypothetical protein

Coordinates

chr1:+:54534262..54538495

Molecular Weight (calculated)

35469.9 Da

IEP (calculated)

4.718

GRAVY (calculated)

0.037

Length

316 amino acids

Sequence
(BLAST)

001: MASKLAFTLT YPLPLTPISS LSSSSASRLH LLQFNGRHIC LRPRLFLFSP MATADQDKVE EDAAVVDSKI LQYCSIDKKE KKSVGEMEQE FLQALQAFYY
101: EGKAIMSNEE FDNLKEELMW EGSTVVMLSS DEQKFLEASM AYVSGKPILS DKEFDELKLR LKMEGSEIVA EGPRCSLRSR KVYSDLSVDY LKMFLLNVPA
201: TVVALGLFFF LDDVTGFEIS YLIKIPEPFS FILTWFAAIP FILWLAQSIT RAIVQDFLIL KGPCPNCGTE NTSFFGTILS VSSGDSTNKV KCENCETKMV
301: YDSKTRLITL PEGSNA

Best Arabidopsis Sequence Match ( AT4G22890.5 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSVGGD NVDSNVLPYC SINKAEKKTI GEMEQEFLQA
101: LQSFYYDGKA IMSNEEFDNL KEELMWEGSS VVMLSSDEQR FLEASMAYVS GNPILNDEEY DKLKLKLKID GSDIVSEGPR CSLRSKKVYS DLAVDYFKML
201: LLNVPATVVA LGLFFFLDDI TGFEITYIME LPEPYSFIFT WFAAVPVIVY LALSITKLII KDFLILKGPC PNCGTENTSF FGTILSISSG GKTNTVKCTN
301: CGTAMVYDSG SRLITLPEGS QA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.