Factsheet for Zm00001d019454_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G800780_P01
GRMZM5G884960_P01
Zm00001d011833_P001
Zm00001d013039_P001
Zm00001d034543_P001
Zm00001d035001_P001
Zm00001d035002_P001
Zm00001d035003_P001
Zm00001d042049_P001
Zm00001d045575_P001
Zm00001d049732_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	Zm00001d011833_P001	AT1G20020.1	18243102
AT4G22890.1	Zm00001d042049_P001	AT1G20020.1	18243102
AT4G22890.1	Zm00001d045575_P001	AT1G20020.1	18243102
AT4G22890.1	Zm00001d035001_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d035002_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d035003_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d049732_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d013039_P001	AT4G02770.1	18243102
AT4G22890.1	Zm00001d034543_P001	AT4G02770.1	18243102
AT4G22890.1	Zm00001d011833_P001	AT5G66190.1	18243102
AT4G22890.1	Zm00001d042049_P001	AT5G66190.1	18243102
AT4G22890.1	Zm00001d045575_P001	AT5G66190.1	18243102
AT4G22890.1	GRMZM5G800780_P01	ATCG00720.1	18243102
AT4G22890.1	GRMZM5G884960_P01	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34948	Sorghum	plastid	78.81	79.52
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	65.07	77.31
Os08t0526300-02	Rice	plastid	70.45	71.73
Zm00001d034904_P001	Maize	plastid	48.66	71.18
GSMUA_Achr2P12240_001	Banana	plastid	65.07	68.99
KRH26378	Soybean	plasma membrane	30.45	68.92
KRH57278	Soybean	plastid	64.48	67.29
PGSC0003DMT400032525	Potato	plastid	62.69	65.83
KRH77457	Soybean	plastid	61.19	64.87
VIT_02s0025g04710.t01	Wine grape	plastid	62.99	64.72
KRH04003	Soybean	plastid	63.58	64.16
PGSC0003DMT400058521	Potato	plastid	60.9	63.75
Solyc08g007770.2.1	Tomato	plastid	58.21	63.52
Zm00001d034900_P001	Maize	plastid	60.9	63.35
CDY41285	Canola	plastid	60.3	63.32
Bra013653.1-P	Field mustard	plastid	60.3	63.32
CDY10819	Canola	plastid	60.0	63.01
CDY68977	Canola	plastid	60.0	62.81
CDX94134	Canola	plastid	60.0	62.81
Bra019349.1-P	Field mustard	plastid	60.0	62.81
AT4G11960.1	Thale cress	plastid	58.51	62.62
Solyc08g080050.2.1	Tomato	plastid	57.01	62.01
CDX90812	Canola	plastid	59.1	61.88
Bra000757.1-P	Field mustard	plastid	59.1	61.88
CDY51552	Canola	plastid	58.51	61.25
AT4G22890.1	Thale cress	plastid	58.81	60.8
Os08t0310500-00	Rice	plastid	14.93	38.17

Protein Annotations

EnsemblPlants:Zm00001d019454_P001	EnsemblPlants:Zm00001d019454_T001	EnsemblPlantsGene:Zm00001d019454	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF6	ProteinID:ONM52945.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000843AA19
UniProt:A0A1D6HXK1	MapMan:1.1.6.1.2	:	:	:	:

Description

PGR5-like protein 1B chloroplastic

Coordinates

chr7:-:34478617..34488461

Molecular Weight (calculated)

37060.6 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.130

Length

335 amino acids

Sequence
(BLAST)

001: MATQYARLSL PCRLPSPLPP PVPTTTRRLP RAAAAAASTS PRCPRVGGAA ATRARGPCRP RASEGEVQQQ EAEADQVVDS NMLPYCSINR KEKKSIGEME
101: QEFLQAMQAR THARAFYYEG KAIMSNEEFD NLKEELMWEG SSVVMLSPDE QKLLEAAMAY VSGNPIMTDD EFDQLKLRLK KEGSDIVQEG PRCSLRSRKV
201: YSDLTVDYLK MLLLNVPAAV VALALFFFLD DFTGFEITYL LELPEPFSFI FTWFAALPLI FWVAQAITNV IVKDFLILKG PCPNCGNENL SFFGTILSVP
301: SGGSKNSVKC ASCGTELEYD SSTRLITLPE PAEAK

Best Arabidopsis Sequence Match ( AT4G22890.5 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSVGGD NVDSNVLPYC SINKAEKKTI GEMEQEFLQA
101: LQSFYYDGKA IMSNEEFDNL KEELMWEGSS VVMLSSDEQR FLEASMAYVS GNPILNDEEY DKLKLKLKID GSDIVSEGPR CSLRSKKVYS DLAVDYFKML
201: LLNVPATVVA LGLFFFLDDI TGFEITYIME LPEPYSFIFT WFAAVPVIVY LALSITKLII KDFLILKGPC PNCGTENTSF FGTILSISSG GKTNTVKCTN
301: CGTAMVYDSG SRLITLPEGS QA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.