Factsheet for Zm00001d035001_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 21196305
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001
Zm00001d037221_P001
Zm00001d038652_P003
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT1G60950.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d034904_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035002_P001	Maize	plastid	79.33	86.23
EES13199	Sorghum	plastid	73.33	76.92
KXG24178	Sorghum	plastid	77.33	76.82
Os08t0104600-02	Rice	extracellular	70.0	75.54
GSMUA_Achr8P32490_001	Banana	cytosol	34.67	75.36
HORVU7Hr1G077750.1	Barley	plastid	70.0	74.47
TraesCS7D01G322100.1	Wheat	plastid	70.0	74.47
TraesCS7A01G325500.1	Wheat	plastid	70.0	73.94
TraesCS7B01G226200.1	Wheat	plastid	70.0	73.94
TraesCS7A01G325400.1	Wheat	plastid	68.0	71.33
TraesCS7B01G226100.1	Wheat	plastid	68.0	71.33
TraesCS7D01G322000.1	Wheat	plastid	67.33	70.63
HORVU7Hr1G077740.1	Barley	plastid	67.33	70.63
KRH44081	Soybean	cytosol	46.67	69.31
Zm00001d035003_P001	Maize	plastid	62.67	67.14
KRH26360	Soybean	nucleus, plastid	57.33	58.5
PGSC0003DMT400087715	Potato	cytosol, plastid	40.0	57.69
VIT_12s0035g00270.t01	Wine grape	plastid	54.0	57.04
AT1G60950.1	Thale cress	plastid	56.0	56.76
PGSC0003DMT400011522	Potato	plastid	51.33	56.62
Solyc01g103920.2.1	Tomato	plastid	52.67	56.43
CDY54581	Canola	plastid	55.33	56.08
CDY54579	Canola	plastid	55.33	56.08
CDY46194	Canola	plastid	55.33	56.08
CDY44833	Canola	plastid	55.33	56.08
CDY12877	Canola	plastid	55.33	56.08
CDY03773	Canola	plastid	55.33	56.08
Bra031471.1-P	Field mustard	plastid	55.33	56.08
Bra027109.1-P	Field mustard	plastid	55.33	56.08
KRH26361	Soybean	nucleus	54.67	55.78
Solyc10g044520.1.1	Tomato	plastid	53.33	55.56
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	53.33	55.56
Zm00001d049732_P001	Maize	plastid	56.0	54.19
AT1G10960.1	Thale cress	plastid	53.33	54.05
CDY20591	Canola	plastid	53.33	54.05
KRH43040	Soybean	nucleus, plastid	51.33	53.47
Bra018415.1-P	Field mustard	plastid	52.67	53.38
CDY20975	Canola	plastid	52.67	53.38
Solyc10g075160.1.1	Tomato	plastid	50.67	52.78
CDY33318	Canola	plastid	52.0	52.7
KRH59154	Soybean	nucleus, plastid	51.33	52.38
CDY19334	Canola	plastid	48.0	51.8
CDX97925	Canola	plastid	50.67	51.35
KRH26359	Soybean	mitochondrion, plastid	58.67	50.57
Zm00001d034760_P001	Maize	mitochondrion, plastid	48.67	48.03
Zm00001d003797_P001	Maize	plastid	48.67	47.1
Zm00001d025352_P001	Maize	plastid	48.0	46.75
Bra040469.1-P	Field mustard	plastid	53.33	45.98
Zm00001d012293_P001	Maize	plastid	43.33	43.92
Zm00001d010136_P001	Maize	plastid	44.67	43.51
Zm00001d038291_P001	Maize	plastid	43.33	42.21
Zm00001d033469_P001	Maize	plastid	26.67	26.67
Zm00001d013534_P002	Maize	plastid	24.0	18.75

Protein Annotations

MapMan:1.1.5.1	EntrezGene:101027099	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
ProteinID:AQK78058.1	UniProt:B1P759	EMBL:BT040012	EMBL:BT043342	InterPro:Beta-grasp_dom_sf	EMBL:EU328185
EMBL:EU967309	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009987	GO:GO:0015979	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000160BC11
EnsemblPlantsGene:Zm00001d035001	EnsemblPlants:Zm00001d035001_P001	EnsemblPlants:Zm00001d035001_T001	SEG:seg	:	:

Description

ferredoxin1 ferredoxin1

Coordinates

chr6:-:1392078..1392530

Molecular Weight (calculated)

15705.4 Da

IEP (calculated)

4.349

GRAVY (calculated)

-0.063

Length

150 amino acids

Sequence
(BLAST)

001: MATVLGSPRA PAFFFSPSSL RAAPAPTAVA LPAAKVGIMG RSASSRGRLR AQATYNVKLI TPEGEVELQV PDDVYILDQA EEDGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSYLDDGQ IAAGWVLTCH AYPTSDVVIE THKEEELTGA

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.