Factsheet for Zm00001d012293_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055280.1.1	Tomato	cytosol	46.62	70.41
EES01793	Sorghum	plastid	78.38	70.3
HORVU3Hr1G084210.1	Barley	plastid	70.27	69.8
TraesCS3D01G366600.1	Wheat	plastid	68.92	66.23
TraesCS3B01G406100.1	Wheat	plastid	68.92	66.23
TraesCS3A01G373900.1	Wheat	mitochondrion	62.16	64.79
Os01t0860601-01	Rice	plastid	67.57	60.61
Solyc11g006910.1.1	Tomato	mitochondrion, plastid	48.65	57.6
Bra009066.1-P	Field mustard	cytosol	37.16	56.12
Zm00001d010136_P001	Maize	plastid	58.11	55.84
Zm00001d038291_P001	Maize	plastid	56.76	54.55
PGSC0003DMT400061612	Potato	plastid	50.68	50.0
PGSC0003DMT400060121	Potato	plastid	50.68	50.0
Zm00001d034760_P001	Maize	mitochondrion, plastid	50.68	49.34
Zm00001d035002_P001	Maize	plastid	43.24	46.38
Zm00001d025352_P001	Maize	plastid	47.97	46.1
Zm00001d003797_P001	Maize	plastid	47.3	45.16
Zm00001d035003_P001	Maize	plastid	42.57	45.0
Solyc04g009710.1.1	Tomato	plastid	45.27	43.51
Zm00001d035001_P001	Maize	plastid	43.92	43.33
Zm00001d049732_P001	Maize	plastid	45.27	43.23
CDY21622	Canola	plastid	41.89	41.61
CDX69869	Canola	plastid	39.19	39.19
AT5G10000.1	Thale cress	plastid	37.84	37.84
Zm00001d033469_P001	Maize	plastid	29.05	28.67
Zm00001d013534_P002	Maize	plastid	27.03	20.83

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100382495	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
ProteinID:AQK99284.1	EMBL:BT064547	InterPro:Beta-grasp_dom_sf	UniProt:C0P8C8	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF7	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001949028	EnsemblPlantsGene:Zm00001d012293	EnsemblPlants:Zm00001d012293_P001
EnsemblPlants:Zm00001d012293_T001	SEG:seg	:	:	:	:

Description

Probable ferredoxin-4 chloroplastic

Coordinates

chr8:-:172030728..172031174

Molecular Weight (calculated)

15492.1 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.116

Length

148 amino acids

Sequence
(BLAST)

001: MATAAAAATA MCSVPGPSGS MRRRAFCTWK KADAPRVASS SVARVVRASA AAVHRVKLVG PDGSESELEV AEDTYVLDAA EEAGLELPYS CRAGSCATCA
101: GKLASGEVDQ SEGSFLDDAQ RAEGYVLTCV SYPRADCVIY THKEEEVH

Best Arabidopsis Sequence Match ( AT5G10000.1 )
(BLAST)

001: MDQVLYSSYI IKIPVISRIS PSQAQLTTRL NNTTYFGLSS SRGNFGKVFA KESRKVKLIS PEGEEQEIEG NEDCCILESA ENAGLELPYS CRSGTCGTCC
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI

Arabidopsis Description

FD4Probable ferredoxin-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIA7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.