Factsheet for Zm00001d003797_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10739	Sorghum	plastid	83.87	83.33
Zm00001d025352_P001	Maize	plastid	78.71	79.22
TraesCS2B01G311100.1	Wheat	plastid	70.97	73.33
HORVU2Hr1G072880.1	Barley	plastid	70.32	72.19
TraesCS2D01G292400.1	Wheat	plastid	69.68	72.0
Os04t0412200-01	Rice	plastid	64.52	65.79
Zm00001d035002_P001	Maize	plastid	47.74	53.62
Zm00001d035003_P001	Maize	plastid	46.45	51.43
Zm00001d034760_P001	Maize	mitochondrion, plastid	50.32	51.32
Bra012013.1-P	Field mustard	plastid	48.39	49.34
CDX71446	Canola	plastid	48.39	49.34
CDY04500	Canola	plastid	48.39	49.34
Zm00001d035001_P001	Maize	plastid	47.1	48.67
Bra000507.1-P	Field mustard	plastid	47.1	47.4
CDY31182	Canola	plastid	47.1	47.4
CDX83271	Canola	plastid	47.1	47.4
Zm00001d012293_P001	Maize	plastid	45.16	47.3
Bra034355.1-P	Field mustard	plastid	43.23	45.89
AT2G27510.1	Thale cress	plastid	45.16	45.16
Zm00001d010136_P001	Maize	plastid	44.52	44.81
CDY30545	Canola	plastid	44.52	44.52
Zm00001d049732_P001	Maize	plastid	44.52	44.52
CDX77119	Canola	plastid	44.52	44.23
Zm00001d038291_P001	Maize	plastid	43.87	44.16
Zm00001d033469_P001	Maize	plastid	27.1	28.0
Zm00001d013534_P002	Maize	plastid	23.23	18.75

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100191704	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
UniProt:B4F9V1	EMBL:BT033889	InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041
InterPro:IPR012675	ProteinID:ONM17729.1	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF2	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI00017B62FC	EnsemblPlantsGene:Zm00001d003797	EnsemblPlants:Zm00001d003797_P001
EnsemblPlants:Zm00001d003797_T001	:	:	:	:	:

Description

Ferredoxin-3 chloroplastic

Coordinates

chr2:-:59723085..59723552

Molecular Weight (calculated)

16733.8 Da

IEP (calculated)

4.552

GRAVY (calculated)

-0.141

Length

155 amino acids

Sequence
(BLAST)

001: MATFASPLLC NFMAIEQKNA PQLTNSRKPS PRLSFPTTRS MPTLPLPGFR ARPDWRVAAV YKVKLIGPEG QESVIQVPED SYILDAAEEA GIDLPYSCRA
101: GACSTCAGKV LEGSVDQADQ SFLDDAQVGA GYALTCVAYP TSDCVIQTHR EADLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.