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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY31182 Canola plastid 87.1 87.66
CDY30545 Canola plastid 87.1 87.1
Bra000507.1-P Field mustard plastid 86.45 87.01
CDX83271 Canola plastid 86.45 87.01
Bra034355.1-P Field mustard plastid 81.94 86.99
CDY04500 Canola plastid 83.87 85.53
Bra012013.1-P Field mustard plastid 83.23 84.87
CDX77119 Canola plastid 85.16 84.62
CDX71446 Canola plastid 82.58 84.21
AT1G10960.1 Thale cress plastid 47.74 50.0
Os04t0412200-01 Rice plastid 47.74 48.68
AT1G60950.1 Thale cress plastid 45.81 47.97
HORVU2Hr1G072880.1 Barley plastid 46.45 47.68
Zm00001d025352_P001 Maize plastid 47.1 47.4
TraesCS2B01G311100.1 Wheat plastid 45.81 47.33
TraesCS2D01G292400.1 Wheat plastid 45.81 47.33
EES10739 Sorghum plastid 46.45 46.15
Zm00001d003797_P001 Maize plastid 45.16 45.16
AT5G10000.1 Thale cress plastid 38.06 39.86
AT4G14890.1 Thale cress plastid 32.9 33.12
AT1G32550.2 Thale cress plastid 24.52 19.59
Protein Annotations
MapMan:1.1.5.1InterPro:2Fe-2S_ferredoxin-like_sfInterPro:2Fe-2S_ferredoxin-typeInterPro:2Fe2S_fd_BSGene3D:3.10.20.30EntrezGene:817297
UniProt:A0A178VWS0ProteinID:AAD15602.1ProteinID:AEC08008.1ArrayExpress:AT2G27510EnsemblPlantsGene:AT2G27510RefSeq:AT2G27510
TAIR:AT2G27510RefSeq:AT2G27510-TAIR-GEnsemblPlants:AT2G27510.1TAIR:AT2G27510.1Symbol:ATFD3EMBL:AY086622
EMBL:BT004187EMBL:BT005393InterPro:Beta-grasp_dom_sfInterPro:Fd_plnGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091
GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009507GO:GO:0009536GO:GO:0009987
GO:GO:0022900GO:GO:0046872GO:GO:0051536GO:GO:0051537GO:GO:0055114InterPro:IPR001041
InterPro:IPR012675RefSeq:NP_180320.1ProteinID:OAP10276.1PFAM:PF00111PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS00197PFscan:PS51085
PANTHER:PTHR43112PANTHER:PTHR43112:SF4UniProt:Q9ZQG8SUPFAM:SSF54292TIGRFAMs:TIGR02008UniParc:UPI000000C2CF
Description
FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
Coordinates
chr2:-:11757955..11759588
Molecular Weight (calculated)
16634.5 Da
IEP (calculated)
4.925
GRAVY (calculated)
-0.261
Length
155 amino acids
Sequence
(BLAST)
001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.