CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000507.1-P	Field mustard	plastid	100.0	100.0
CDY31182	Canola	plastid	96.75	96.75
CDY04500	Canola	plastid	87.01	88.16
CDX71446	Canola	plastid	85.71	86.84
CDY30545	Canola	plastid	87.01	86.45
AT2G27510.1	Thale cress	plastid	87.01	86.45
CDX77119	Canola	plastid	85.71	84.62
Os04t0412200-01	Rice	plastid	48.7	49.34
CDY20591	Canola	plastid	47.4	49.32
CDY19334	Canola	plastid	44.16	48.92
CDX97925	Canola	plastid	46.75	48.65
CDY20975	Canola	plastid	46.75	48.65
HORVU2Hr1G072880.1	Barley	plastid	47.4	48.34
TraesCS2D01G292400.1	Wheat	plastid	46.75	48.0
TraesCS2B01G311100.1	Wheat	plastid	46.75	48.0
CDY12877	Canola	plastid	46.1	47.97
CDY44833	Canola	plastid	46.1	47.97
CDY03773	Canola	plastid	45.45	47.3
CDY46194	Canola	plastid	45.45	47.3
Zm00001d003797_P001	Maize	plastid	47.4	47.1
EES10739	Sorghum	plastid	47.4	46.79
Zm00001d025352_P001	Maize	plastid	46.75	46.75
CDY54579	Canola	plastid	44.81	46.62
CDY54581	Canola	plastid	44.81	46.62
CDY33318	Canola	plastid	42.21	43.92
CDX69869	Canola	plastid	38.96	40.54
CDY21622	Canola	plastid	38.96	40.27
CDY29779	Canola	plastid	31.17	33.33
CDY42796	Canola	plastid	31.82	32.45
CDY71732	Canola	cytosol	18.18	22.76
CDY66059	Canola	plastid	24.03	20.67
CDX84071	Canola	plastid	24.03	20.67
CDX93825	Canola	plastid	24.03	20.67

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	GO:A0A078D1N3
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDX83271	ProteinID:CDX83271	ProteinID:CDX83271.1	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	GO:GO:0051537	EnsemblPlantsGene:GSBRNA2T00138822001	InterPro:IPR001041
InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4
SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0002540026	:	:	:

Description

BnaA03g22350D

Coordinates

chrLK031832:-:742959..743922

Molecular Weight (calculated)

16699.5 Da

IEP (calculated)

5.206

GRAVY (calculated)

-0.412

Length

154 amino acids

Sequence
(BLAST)

001: MATVRVSSTS MTKAVRRSQP TNKLTTNKSQ HVSVGSVNKV SRSFGLKCSA YSGATMSAVY KVKLIGPDGQ ENEFDVQDDQ YILDAAEEAG VDLPYSCRAG
101: ACSTCAGNIE RGQVDQSDGS FLEDDHMEKG YVLTCVAYPQ SDCVIHTHKE TELF

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.