CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036911.1-P	Field mustard	plastid	99.31	94.7
CDY42796	Canola	plastid	92.36	88.08
AT4G14890.1	Thale cress	plastid	89.58	83.77
KRH27637	Soybean	mitochondrion, plastid	65.97	64.63
KRH77855	Soybean	plastid	63.89	62.59
PGSC0003DMT400086140	Potato	plastid	63.89	61.33
VIT_05s0020g03490.t01	Wine grape	plastid	60.42	59.18
Zm00001d033469_P001	Maize	plastid	56.94	54.67
EER93719	Sorghum	plastid	54.86	53.02
Os03t0659200-01	Rice	plastid	52.78	51.7
TraesCS4B01G015800.1	Wheat	plastid	50.69	51.41
TraesCS4A01G297900.1	Wheat	plastid	50.69	50.0
HORVU4Hr1G002520.1	Barley	plastid	51.39	50.0
TraesCS4D01G014200.1	Wheat	plastid	51.39	49.33
CDY04500	Canola	plastid	35.42	33.55
CDX71446	Canola	plastid	34.03	32.24
CDY31182	Canola	plastid	34.03	31.82
CDY30545	Canola	plastid	34.03	31.61
CDX77119	Canola	plastid	34.03	31.41
CDX83271	Canola	plastid	33.33	31.17
CDY20591	Canola	plastid	31.94	31.08
Solyc03g005190.2.1	Tomato	nucleus	63.19	31.06
CDY54579	Canola	plastid	31.25	30.41
CDY54581	Canola	plastid	31.25	30.41
CDY03773	Canola	plastid	31.25	30.41
CDY44833	Canola	plastid	31.25	30.41
CDY46194	Canola	plastid	31.25	30.41
CDY12877	Canola	plastid	30.56	29.73
CDY33318	Canola	plastid	30.56	29.73
CDY20975	Canola	plastid	30.56	29.73
CDX97925	Canola	plastid	29.86	29.05
CDY19334	Canola	plastid	27.78	28.78
CDX69869	Canola	plastid	27.78	27.03
CDY21622	Canola	plastid	27.78	26.85
CDX84071	Canola	plastid	28.47	22.91
CDY66059	Canola	plastid	28.47	22.91
CDX93825	Canola	plastid	27.78	22.35
CDY71732	Canola	cytosol	18.75	21.95

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	GO:A0A078GX98	UniProt:A0A078GX98
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY29779	ProteinID:CDY29779	ProteinID:CDY29779.1	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00043644001	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF9	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0004EE60BA	:	:

Description

BnaA01g18870DFerredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078GX98]

Coordinates

chrLK032243:+:471147..471581

Molecular Weight (calculated)

15730.8 Da

IEP (calculated)

4.206

GRAVY (calculated)

-0.093

Length

144 amino acids

Sequence
(BLAST)

001: MATLPLPQIS TISPPKPYLS NTFSFPLRNV SLSTRNRLVA RSYKVVVEQD GKTTELEVEP DETILSKALE SGMDVPYDCN LGVCMTCPAK LVTGTVDQSD
101: GMLSEDVVER GYALLCASYP TSDCHIKMIP EEELLSLQLA TAND

Best Arabidopsis Sequence Match ( AT4G14890.1 )
(BLAST)

001: MATLPLPTQT STISLPKPYL SNSFSFPLRN ATLSTTTNRR NFLTTGRIIA RAYKVVVEHD GKTTELEVEP DETILSKALD SGLDVPYDCN LGVCMTCPAK
101: LVTGTVDQSG GMLSDDVVER GYTLLCASYP TSDCHIKMIP EEELLSLQLA TAND

Arabidopsis Description

FdC2Ferredoxin C 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23344]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.