Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G015800.1 | Wheat | plastid | 89.04 | 91.55 |
| TraesCS4D01G014200.1 | Wheat | plastid | 93.15 | 90.67 |
| HORVU4Hr1G002520.1 | Barley | plastid | 90.41 | 89.19 |
| Zm00001d033469_P001 | Maize | plastid | 76.03 | 74.0 |
| EER93719 | Sorghum | plastid | 75.34 | 73.83 |
| Os03t0659200-01 | Rice | plastid | 73.97 | 73.47 |
| KRH77855 | Soybean | plastid | 58.9 | 58.5 |
| KRH27637 | Soybean | mitochondrion, plastid | 58.22 | 57.82 |
| VIT_05s0020g03490.t01 | Wine grape | plastid | 56.85 | 56.46 |
| PGSC0003DMT400086140 | Potato | plastid | 55.48 | 54.0 |
| CDY29779 | Canola | plastid | 50.0 | 50.69 |
| AT4G14890.1 | Thale cress | plastid | 51.37 | 48.7 |
| Bra036911.1-P | Field mustard | plastid | 50.0 | 48.34 |
| CDY42796 | Canola | plastid | 50.0 | 48.34 |
| TraesCS7A01G325400.1 | Wheat | plastid | 29.45 | 30.07 |
| TraesCS7A01G325500.1 | Wheat | plastid | 28.77 | 29.58 |
| TraesCS3A01G373900.1 | Wheat | mitochondrion | 28.08 | 28.87 |
| Solyc03g005190.2.1 | Tomato | nucleus | 57.53 | 28.67 |
| TraesCS1A01G276300.1 | Wheat | plastid | 28.77 | 27.81 |
| TraesCS4A01G355200.1 | Wheat | plastid | 27.4 | 24.69 |
| TraesCS4A01G286700.1 | Wheat | plastid | 29.45 | 23.37 |
| TraesCS4A01G356200.1 | Wheat | mitochondrion, plastid | 29.45 | 20.48 |
Protein Annotations
| InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | Gene3D:3.10.20.30 | MapMan:35.1 | InterPro:Beta-grasp_dom_sf | InterPro:Fd_pln |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009644 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0051536 |
| GO:GO:0051537 | InterPro:IPR001041 | InterPro:IPR012675 | PFAM:PF00111 | PFscan:PS51085 | PANTHER:PTHR43112 |
| PANTHER:PTHR43112:SF9 | SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | EnsemblPlantsGene:TraesCS4A01G297900 | EnsemblPlants:TraesCS4A01G297900.1 | TIGR:cd00207 |
Description
No Description!
Coordinates
chr4A:-:596827940..596828380
Molecular Weight (calculated)
15710.9 Da
IEP (calculated)
4.956
GRAVY (calculated)
-0.034
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASLLHLA TPISSPRLHL GHSAAILLGR QHPQVRLTAA APRAHRVTIE HGGESRVVEM EEDENILERA LEEGLDVPHD CKLGVCMTCP ARLVSGKVDQ
101: SDGMLSDDVV AQGYALLCAA YPRSDCTIRV IPEDELLQVQ LATAND
101: SDGMLSDDVV AQGYALLCAA YPRSDCTIRV IPEDELLQVQ LATAND
001: MATLPLPTQT STISLPKPYL SNSFSFPLRN ATLSTTTNRR NFLTTGRIIA RAYKVVVEHD GKTTELEVEP DETILSKALD SGLDVPYDCN LGVCMTCPAK
101: LVTGTVDQSG GMLSDDVVER GYTLLCASYP TSDCHIKMIP EEELLSLQLA TAND
101: LVTGTVDQSG GMLSDDVVER GYTLLCASYP TSDCHIKMIP EEELLSLQLA TAND
Arabidopsis Description
FdC2Ferredoxin C 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23344]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.