Factsheet for Solyc03g005190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086140	Potato	plastid	49.15	96.0
VIT_05s0020g03490.t01	Wine grape	plastid	34.13	68.03
KRH77855	Soybean	plastid	33.45	66.67
KRH27637	Soybean	mitochondrion, plastid	33.11	65.99
CDY29779	Canola	plastid	31.06	63.19
AT4G14890.1	Thale cress	plastid	32.08	61.04
CDY42796	Canola	plastid	31.4	60.93
Bra036911.1-P	Field mustard	plastid	31.06	60.26
Zm00001d033469_P001	Maize	plastid	30.72	60.0
EER93719	Sorghum	plastid	30.03	59.06
TraesCS4A01G297900.1	Wheat	plastid	28.67	57.53
Os03t0659200-01	Rice	plastid	28.33	56.46
TraesCS4B01G015800.1	Wheat	plastid	27.3	56.34
HORVU4Hr1G002520.1	Barley	plastid	27.99	55.41
TraesCS4D01G014200.1	Wheat	plastid	28.33	55.33
Solyc05g055280.1.1	Tomato	cytosol	15.7	46.94
Solyc11g006910.1.1	Tomato	mitochondrion, plastid	15.36	36.0
Solyc11g068430.1.1	Tomato	nucleus	13.99	33.06
Solyc01g103920.2.1	Tomato	plastid	15.02	31.43
Solyc04g009710.1.1	Tomato	plastid	15.7	29.87
Solyc10g044520.1.1	Tomato	plastid	14.68	29.86
Solyc10g075160.1.1	Tomato	plastid	13.31	27.08
Solyc08g077050.2.1	Tomato	plastid	13.99	21.47

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	InterPro:Beta-grasp_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	UniProt:K4BDU3
PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	SUPFAM:SSF54292	EnsemblPlantsGene:Solyc03g005190.2
EnsemblPlants:Solyc03g005190.2.1	UniParc:UPI0002768E87	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:115979..117377

Molecular Weight (calculated)

32315.2 Da

IEP (calculated)

7.102

GRAVY (calculated)

-0.125

Length

293 amino acids

Sequence
(BLAST)

001: MAPNSIKKLR KLPHVFSKVL QLPIPSDADV EVVENPDFFR FMAKMDQHGE NIRNVRAQTV EIHPGITKIV VVRNGGEAML DQLNVDTWRF RLPTSTKPEL
101: ATAAFADGEL IVTVPKGVNG RGGKDVLLIH TNKTLTLTFS SLTMATIQLT TSPSLTLIPS RKQANLAAIK LNSPWSVRRR ENRRVSSVVR AYKVIVEHEG
201: KTTELEVEPD ETILSKAIDV GMSVPYDCKL GVCMTCPAKL LSGNVDQSEG MLSDDVVERG YALLCAAYPR SDCHIRVIPE EELLSLQLAT ADD

Best Arabidopsis Sequence Match ( AT4G14890.1 )
(BLAST)

001: MATLPLPTQT STISLPKPYL SNSFSFPLRN ATLSTTTNRR NFLTTGRIIA RAYKVVVEHD GKTTELEVEP DETILSKALD SGLDVPYDCN LGVCMTCPAK
101: LVTGTVDQSG GMLSDDVVER GYTLLCASYP TSDCHIKMIP EEELLSLQLA TAND

Arabidopsis Description

FdC2Ferredoxin C 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23344]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.