Factsheet for Solyc10g044520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc08g007770.2.1
Solyc08g080050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT1G60950.1	Solyc08g007770.2.1	AT4G22890.1	18243102
AT1G60950.1	Solyc08g080050.2.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g075160.1.1	Tomato	plastid	77.78	77.78
Solyc01g103920.2.1	Tomato	plastid	74.31	76.43
VIT_12s0035g00270.t01	Wine grape	plastid	71.53	72.54
KRH59154	Soybean	nucleus, plastid	70.14	68.71
GSMUA_Achr5P01200_001	Banana	plastid	65.97	66.43
KRH43040	Soybean	nucleus, plastid	65.97	65.97
CDY03773	Canola	plastid	64.58	62.84
AT1G60950.1	Thale cress	plastid	63.89	62.16
CDY46194	Canola	plastid	63.89	62.16
CDY44833	Canola	plastid	63.89	62.16
CDY12877	Canola	plastid	63.89	62.16
Bra027109.1-P	Field mustard	plastid	63.89	62.16
Bra031471.1-P	Field mustard	plastid	63.89	62.16
CDY54579	Canola	plastid	63.19	61.49
CDY54581	Canola	plastid	63.19	61.49
CDY20591	Canola	plastid	63.19	61.49
AT1G10960.1	Thale cress	plastid	62.5	60.81
TraesCS7D01G322000.1	Wheat	plastid	59.72	60.14
TraesCS7B01G226100.1	Wheat	plastid	59.72	60.14
TraesCS7A01G325400.1	Wheat	plastid	59.72	60.14
HORVU7Hr1G077740.1	Barley	plastid	59.72	60.14
CDY20975	Canola	plastid	61.81	60.14
Bra018415.1-P	Field mustard	plastid	60.42	58.78
Solyc05g055280.1.1	Tomato	cytosol	39.58	58.16
HORVU7Hr1G077750.1	Barley	plastid	56.94	58.16
TraesCS7D01G322100.1	Wheat	plastid	56.94	58.16
CDY33318	Canola	plastid	59.72	58.11
TraesCS7B01G226200.1	Wheat	plastid	56.94	57.75
TraesCS7A01G325500.1	Wheat	plastid	56.94	57.75
EES13199	Sorghum	plastid	56.25	56.64
Zm00001d035002_P001	Maize	plastid	54.17	56.52
CDX97925	Canola	plastid	56.94	55.41
Os08t0104600-02	Rice	extracellular	53.47	55.4
KXG24178	Sorghum	plastid	57.64	54.97
EES13198	Sorghum	plastid	54.17	54.17
CDY19334	Canola	plastid	52.08	53.96
Zm00001d035001_P001	Maize	plastid	55.56	53.33
Solyc11g068430.1.1	Tomato	nucleus	45.83	53.23
Zm00001d035003_P001	Maize	plastid	50.69	52.14
Solyc11g006910.1.1	Tomato	mitochondrion, plastid	43.75	50.4
Bra040469.1-P	Field mustard	plastid	60.42	50.0
Zm00001d049732_P001	Maize	plastid	47.92	44.52
Solyc04g009710.1.1	Tomato	plastid	45.14	42.21
Solyc08g077050.2.1	Tomato	plastid	28.47	21.47
Solyc03g005190.2.1	Tomato	nucleus	29.86	14.68

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	UniProt:Q43517	SUPFAM:SSF54292	EnsemblPlantsGene:Solyc10g044520.1
EnsemblPlants:Solyc10g044520.1.1	TIGRFAMs:TIGR02008	UniParc:UPI000012A659	EMBL:Z75520	SEG:seg	:

Description

SEND33Ferredoxin-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q43517]

Coordinates

chr10:-:26661719..26662153

Molecular Weight (calculated)

15290.0 Da

IEP (calculated)

4.278

GRAVY (calculated)

-0.163

Length

144 amino acids

Sequence
(BLAST)

001: MASISGTMIS TSFLPRKPAV TSLKAISNVG EALFGLKSGR NGRITCMASY KVKLITPEGP IEFECPDDVY ILDQAEEEGH DLPYSCRAGS CSSCAGKVTA
101: GSVDQSDGNF LDEDQEAAGF VLTCVAYPKG DVTIETHKEE ELTA

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.