Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g04710.t01 | |
| VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10960.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
| AT1G60950.1 | VIT_02s0025g04710.t01 | AT4G22890.1 | 18243102 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH59154 | Soybean | nucleus, plastid | 74.65 | 72.11 |
| Solyc10g044520.1.1 | Tomato | plastid | 72.54 | 71.53 |
| KRH43040 | Soybean | nucleus, plastid | 71.83 | 70.83 |
| GSMUA_Achr5P01200_001 | Banana | plastid | 71.13 | 70.63 |
| AT1G10960.1 | Thale cress | plastid | 72.54 | 69.59 |
| PGSC0003DMT400011522 | Potato | plastid | 66.2 | 69.12 |
| AT1G60950.1 | Thale cress | plastid | 71.83 | 68.92 |
| CDY20591 | Canola | plastid | 71.13 | 68.24 |
| Bra018415.1-P | Field mustard | plastid | 70.42 | 67.57 |
| PGSC0003DMT400031198 | Potato | cytosol, extracellular, plastid | 68.31 | 67.36 |
| Solyc01g103920.2.1 | Tomato | plastid | 66.2 | 67.14 |
| CDY03773 | Canola | plastid | 69.72 | 66.89 |
| CDY20975 | Canola | plastid | 69.72 | 66.89 |
| CDY44833 | Canola | plastid | 69.72 | 66.89 |
| CDY54579 | Canola | plastid | 69.72 | 66.89 |
| CDY54581 | Canola | plastid | 69.72 | 66.89 |
| CDY46194 | Canola | plastid | 69.01 | 66.22 |
| Bra031471.1-P | Field mustard | plastid | 69.01 | 66.22 |
| CDY12877 | Canola | plastid | 68.31 | 65.54 |
| Bra027109.1-P | Field mustard | plastid | 68.31 | 65.54 |
| Solyc10g075160.1.1 | Tomato | plastid | 66.2 | 65.28 |
| HORVU7Hr1G077750.1 | Barley | plastid | 63.38 | 63.83 |
| TraesCS7D01G322100.1 | Wheat | plastid | 62.68 | 63.12 |
| CDX97925 | Canola | plastid | 65.49 | 62.84 |
| CDY33318 | Canola | plastid | 65.49 | 62.84 |
| TraesCS7A01G325500.1 | Wheat | plastid | 62.68 | 62.68 |
| TraesCS7B01G226200.1 | Wheat | plastid | 62.68 | 62.68 |
| TraesCS7A01G325400.1 | Wheat | plastid | 62.68 | 62.24 |
| HORVU7Hr1G077740.1 | Barley | plastid | 62.68 | 62.24 |
| TraesCS7B01G226100.1 | Wheat | plastid | 62.68 | 62.24 |
| TraesCS7D01G322000.1 | Wheat | plastid | 62.68 | 62.24 |
| CDY19334 | Canola | plastid | 58.45 | 59.71 |
| EES13199 | Sorghum | plastid | 58.45 | 58.04 |
| EES13198 | Sorghum | plastid | 58.45 | 57.64 |
| Zm00001d035002_P001 | Maize | plastid | 55.63 | 57.25 |
| PGSC0003DMT400087715 | Potato | cytosol, plastid | 40.85 | 55.77 |
| KXG24178 | Sorghum | plastid | 58.45 | 54.97 |
| Os08t0104600-02 | Rice | extracellular | 53.52 | 54.68 |
| Bra040469.1-P | Field mustard | plastid | 66.2 | 54.02 |
| Zm00001d035001_P001 | Maize | plastid | 57.04 | 54.0 |
| Zm00001d035003_P001 | Maize | plastid | 52.82 | 53.57 |
| Zm00001d049732_P001 | Maize | plastid | 52.11 | 47.74 |
| VIT_13s0147g00110.t01 | Wine grape | plastid | 53.52 | 45.24 |
| VIT_06s0080g00410.t01 | Wine grape | plastid | 54.93 | 43.33 |
| VIT_05s0020g03490.t01 | Wine grape | plastid | 33.1 | 31.97 |
| VIT_02s0012g00980.t01 | Wine grape | plastid | 30.99 | 23.4 |
Protein Annotations
| MapMan:1.1.5.1 | EntrezGene:100249080 | wikigene:100249080 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS |
| Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf | ProteinID:CCB55080 | ProteinID:CCB55080.1 | UniProt:F6HK77 | EMBL:FN595990 |
| InterPro:Fd_pln | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0046872 | GO:GO:0051536 |
| GO:GO:0051537 | GO:GO:0055114 | InterPro:IPR001041 | InterPro:IPR012675 | EntrezGene:LOC100249080 | wikigene:LOC100249080 |
| PFAM:PF00111 | ScanProsite:PS00197 | PFscan:PS51085 | PANTHER:PTHR43112 | PANTHER:PTHR43112:SF4 | SUPFAM:SSF54292 |
| TIGR:TC55109 | TIGR:TC56529 | TIGR:TC61717 | TIGR:TC64052 | TIGRFAMs:TIGR02008 | UniParc:UPI000198469D |
| ArrayExpress:VIT_12s0035g00270 | EnsemblPlantsGene:VIT_12s0035g00270 | EnsemblPlants:VIT_12s0035g00270.t01 | unigene:Vvi.7857 | RefSeq:XP_002269617 | RefSeq:XP_002269617.1 |
| SEG:seg | : | : | : | : | : |
Description
Ferredoxin [Source:UniProtKB/TrEMBL;Acc:F6HK77]
Coordinates
chr12:-:19514999..19515658
Molecular Weight (calculated)
15349.2 Da
IEP (calculated)
4.287
GRAVY (calculated)
-0.066
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLSGAMVS TSFIRRQPVT SLRALPNVGQ ALFGLKAGRG RVTAMAVYKV KLITPEGAKE FECPDDVYVL DHAEEIGIDL PYSCRAGSCS SCAGRVVEGT
101: VDQSDGSFLE DEQMEEGWVL TCVAYPQSDL VIETHKEEEL TA
101: VDQSDGSFLE DEQMEEGWVL TCVAYPQSDL VIETHKEEEL TA
001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
Arabidopsis Description
FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.