Factsheet for PGSC0003DMT400031198

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400032525
PGSC0003DMT400058521

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT1G60950.1	PGSC0003DMT400032525	AT4G22890.1	18243102
AT1G60950.1	PGSC0003DMT400058521	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g075160.1.1	Tomato	plastid	88.89	88.89
PGSC0003DMT400087715	Potato	cytosol, plastid	50.0	69.23
PGSC0003DMT400011522	Potato	plastid	65.28	69.12
VIT_12s0035g00270.t01	Wine grape	plastid	67.36	68.31
GSMUA_Achr5P01200_001	Banana	plastid	63.89	64.34
KRH59154	Soybean	nucleus, plastid	65.28	63.95
AT1G60950.1	Thale cress	plastid	64.58	62.84
CDY20591	Canola	plastid	64.58	62.84
CDY03773	Canola	plastid	63.89	62.16
CDY44833	Canola	plastid	63.89	62.16
CDY20975	Canola	plastid	63.19	61.49
KRH43040	Soybean	nucleus, plastid	61.11	61.11
Bra027109.1-P	Field mustard	plastid	62.5	60.81
CDY46194	Canola	plastid	62.5	60.81
CDY54579	Canola	plastid	62.5	60.81
CDY54581	Canola	plastid	62.5	60.81
Bra018415.1-P	Field mustard	plastid	62.5	60.81
CDY12877	Canola	plastid	62.5	60.81
Bra031471.1-P	Field mustard	plastid	62.5	60.81
AT1G10960.1	Thale cress	plastid	61.81	60.14
Zm00001d035002_P001	Maize	plastid	55.56	57.97
CDX97925	Canola	plastid	59.03	57.43
CDY33318	Canola	plastid	58.33	56.76
EES13198	Sorghum	plastid	56.25	56.25
CDY19334	Canola	plastid	54.17	56.12
Os08t0104600-02	Rice	extracellular	53.47	55.4
TraesCS7A01G325400.1	Wheat	plastid	54.17	54.55
TraesCS7B01G226100.1	Wheat	plastid	54.17	54.55
TraesCS7D01G322000.1	Wheat	plastid	54.17	54.55
HORVU7Hr1G077740.1	Barley	plastid	54.17	54.55
HORVU7Hr1G077750.1	Barley	plastid	52.78	53.9
Zm00001d035003_P001	Maize	plastid	52.08	53.57
Zm00001d035001_P001	Maize	plastid	55.56	53.33
TraesCS7D01G322100.1	Wheat	plastid	52.08	53.19
TraesCS7A01G325500.1	Wheat	plastid	52.08	52.82
TraesCS7B01G226200.1	Wheat	plastid	52.08	52.82
EES13199	Sorghum	plastid	51.39	51.75
KXG24178	Sorghum	plastid	53.47	50.99
PGSC0003DMT400067774	Potato	plastid	52.78	50.67
PGSC0003DMT400015058	Potato	plastid	52.78	50.33
Bra040469.1-P	Field mustard	plastid	59.72	49.43
Zm00001d049732_P001	Maize	plastid	52.08	48.39
PGSC0003DMT400060121	Potato	plastid	47.92	46.0
PGSC0003DMT400061612	Potato	plastid	46.53	44.67
PGSC0003DMT400086140	Potato	plastid	29.17	28.0
PGSC0003DMT400045201	Potato	plastid	29.86	22.51

Protein Annotations

MapMan:1.1.5.1	EntrezGene:102598947	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	UniProt:M1AVB5
PFAM:PF00111	EnsemblPlantsGene:PGSC0003DMG400011950	PGSC:PGSC0003DMG400011950	EnsemblPlants:PGSC0003DMT400031198	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0002953B86	RefSeq:XP_006367399.1

Description

Chloroplast ferredoxin I [Source:PGSC_GENE;Acc:PGSC0003DMG400011950]

Coordinates

chr00:+:22175464..22176188

Molecular Weight (calculated)

15455.4 Da

IEP (calculated)

4.367

GRAVY (calculated)

-0.069

Length

144 amino acids

Sequence
(BLAST)

001: MATIPSTIVN TCFLPRKPVV TSLKAIPNVG EALFGVKCGR SGRITCMATY KVKLITPDGP FEFDCPDDVY ILDRAEETGI DLPYSCRAGA CSSCAGKVTT
101: GSVDQSDNSY LDDGQMDEGF VLTCVAYPKS NVTIETHKEE DLVG

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.