Factsheet for Os08t0104600-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

vacuole: 16212432
extracellular: 23159799
extracellular: 25047395
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 16212432 doi

H Konishi, M Maeshima, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os03t0857400-01
Os06t0226700-01
Os08t0310500-00
Os08t0526300-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	Os02t0747400-01	AT3G47620.1	21798944
AT1G10960.1	Os06t0226700-01	AT3G47620.1	21798944
AT1G60950.1	Os03t0857400-01	AT4G22890.1	18243102
AT1G60950.1	Os08t0310500-00	AT4G22890.1	18243102
AT1G60950.1	Os08t0526300-02	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035002_P001	Maize	plastid	76.26	76.81
EES13198	Sorghum	plastid	79.14	76.39
GSMUA_Achr8P32490_001	Banana	cytosol	36.69	73.91
TraesCS7A01G325400.1	Wheat	plastid	74.1	72.03
EES13199	Sorghum	plastid	74.1	72.03
TraesCS7B01G226100.1	Wheat	plastid	74.1	72.03
TraesCS7D01G322100.1	Wheat	plastid	72.66	71.63
TraesCS7D01G322000.1	Wheat	plastid	73.38	71.33
HORVU7Hr1G077740.1	Barley	plastid	73.38	71.33
TraesCS7B01G226200.1	Wheat	plastid	72.66	71.13
TraesCS7A01G325500.1	Wheat	plastid	72.66	71.13
HORVU7Hr1G077750.1	Barley	plastid	71.94	70.92
KXG24178	Sorghum	plastid	76.26	70.2
Zm00001d035001_P001	Maize	plastid	75.54	70.0
Zm00001d035003_P001	Maize	plastid	66.91	66.43
KRH44081	Soybean	cytosol	46.04	63.37
PGSC0003DMT400011522	Potato	plastid	54.68	55.88
Solyc01g103920.2.1	Tomato	plastid	55.4	55.0
Zm00001d049732_P001	Maize	plastid	61.15	54.84
KRH26361	Soybean	nucleus	57.55	54.42
KRH26360	Soybean	nucleus, plastid	56.83	53.74
VIT_12s0035g00270.t01	Wine grape	plastid	54.68	53.52
Solyc10g044520.1.1	Tomato	plastid	55.4	53.47
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	55.4	53.47
CDY46194	Canola	plastid	56.83	53.38
Bra027109.1-P	Field mustard	plastid	56.83	53.38
Bra031471.1-P	Field mustard	plastid	56.83	53.38
CDY12877	Canola	plastid	56.83	53.38
PGSC0003DMT400087715	Potato	cytosol, plastid	39.57	52.88
CDY54579	Canola	plastid	56.12	52.7
CDY44833	Canola	plastid	56.12	52.7
CDY03773	Canola	plastid	56.12	52.7
CDY54581	Canola	plastid	56.12	52.7
CDY20975	Canola	plastid	55.4	52.03
Bra018415.1-P	Field mustard	plastid	55.4	52.03
AT1G10960.1	Thale cress	plastid	54.68	51.35
AT1G60950.1	Thale cress	plastid	54.68	51.35
Os07t0251500-00	Rice	cytosol	36.69	51.0
KRH43040	Soybean	nucleus, plastid	52.52	50.69
CDY20591	Canola	plastid	53.96	50.68
CDY19334	Canola	plastid	50.36	50.36
Solyc10g075160.1.1	Tomato	plastid	51.8	50.0
KRH59154	Soybean	nucleus, plastid	52.52	49.66
CDY33318	Canola	plastid	52.52	49.32
CDX97925	Canola	plastid	51.8	48.65
KRH26359	Soybean	mitochondrion, plastid	59.71	47.7
Os04t0412200-01	Rice	plastid	51.8	47.37
Os03t0835900-01	Rice	plastid	48.92	44.44
Os05t0443500-01	Rice	plastid	45.32	42.57
Bra040469.1-P	Field mustard	plastid	53.24	42.53
Os01t0860601-01	Rice	plastid	48.2	40.61
Os03t0659200-01	Rice	plastid	30.22	28.57
Os03t0685000-01	Rice	plastid	29.5	22.4

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	EntrezGene:4344439
EMBL:AK119206	EMBL:AK119709	EMBL:AK120393	EMBL:AY072818	ProteinID:BAD08924.1	ProteinID:BAF22693.1
ProteinID:BAT03433.1	InterPro:Beta-grasp_dom_sf	EMBL:D30763	ProteinID:EAZ41237.1	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
InterPro:IPR001041	InterPro:IPR012675	EnsemblPlantsGene:Os08g0104600	EnsemblPlants:Os08t0104600-02	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	UniProt:Q0J8M2	SUPFAM:SSF54292	TIGRFAMs:TIGR02008
UniParc:UPI000012A65E	RefSeq:XP_015650415.1	SEG:seg	:	:	:

Description

Ferredoxin I, ferredoxin, ferredoxin 1, anti-disease protein 1Ferredoxin I, chloroplast precursor (Anti-disease protein 1). (Os08t0104600-02)

Coordinates

chr8:-:241783..242628

Molecular Weight (calculated)

14951.6 Da

IEP (calculated)

4.152

GRAVY (calculated)

-0.122

Length

139 amino acids

Sequence
(BLAST)

001: MAATALSSQV RLPMSLRVAT APAPARVSVL PASNKLGDRL RMQATYNVKL ITPDGEVELQ VPDDVYILDQ AEEEGIDLPY SCRAGSCSSC AGKVVSGEID
101: QSDQSFLDDD QVAAGWVLTC HAYPKSDVVI ETHKEDDLI

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.