Factsheet for Bra018415.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018126.1-P
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	Bra018126.1-P	AT3G47620.1	21798944
AT1G10960.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20975	Canola	plastid	96.62	96.62
AT1G10960.1	Thale cress	plastid	91.89	91.89
Bra031471.1-P	Field mustard	plastid	86.49	86.49
Bra027109.1-P	Field mustard	plastid	85.14	85.14
VIT_12s0035g00270.t01	Wine grape	plastid	67.57	70.42
Bra040469.1-P	Field mustard	plastid	81.76	69.54
GSMUA_Achr5P01200_001	Banana	plastid	66.89	69.23
Solyc10g075160.1.1	Tomato	plastid	63.51	65.28
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	60.81	62.5
PGSC0003DMT400011522	Potato	plastid	56.76	61.76
KRH26360	Soybean	nucleus, plastid	60.81	61.22
Solyc01g103920.2.1	Tomato	plastid	57.43	60.71
TraesCS7B01G226200.1	Wheat	plastid	58.11	60.56
TraesCS7A01G325500.1	Wheat	plastid	58.11	60.56
Solyc10g044520.1.1	Tomato	plastid	58.78	60.42
HORVU7Hr1G077750.1	Barley	plastid	57.43	60.28
TraesCS7D01G322100.1	Wheat	plastid	57.43	60.28
HORVU7Hr1G077740.1	Barley	plastid	57.43	59.44
TraesCS7D01G322000.1	Wheat	plastid	57.43	59.44
TraesCS7A01G325400.1	Wheat	plastid	57.43	59.44
TraesCS7B01G226100.1	Wheat	plastid	57.43	59.44
EES13198	Sorghum	plastid	56.76	58.33
Zm00001d035002_P001	Maize	plastid	54.05	57.97
Zm00001d035003_P001	Maize	plastid	52.7	55.71
Os08t0104600-02	Rice	extracellular	52.03	55.4
EES13199	Sorghum	plastid	53.38	55.24
KXG24178	Sorghum	plastid	54.05	52.98
PGSC0003DMT400087715	Potato	cytosol, plastid	37.16	52.88
Zm00001d035001_P001	Maize	plastid	53.38	52.67
Zm00001d049732_P001	Maize	plastid	53.38	50.97
Bra012013.1-P	Field mustard	plastid	50.68	49.34
Bra009066.1-P	Field mustard	cytosol	31.76	47.96
Bra000507.1-P	Field mustard	plastid	48.65	46.75
Bra034355.1-P	Field mustard	plastid	45.95	46.58
Bra036911.1-P	Field mustard	plastid	31.08	30.46
Bra035490.1-P	Field mustard	plastid	30.41	25.14
Bra023277.1-P	Field mustard	plastid	29.73	24.58

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
EnsemblPlantsGene:Bra018415	EnsemblPlants:Bra018415.1	EnsemblPlants:Bra018415.1-P	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	GO:GO:0080167	InterPro:IPR001041	InterPro:IPR012675	UniProt:M4DPH4	PFAM:PF00111
ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008
UniParc:UPI0002547E68	SEG:seg	:	:	:	:

Description

AT1G10960 (E=2e-056) ATFD1 | ATFD1 (FERREDOXIN 1); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding

Coordinates

chrA05:-:8105909..8106355

Molecular Weight (calculated)

15856.6 Da

IEP (calculated)

4.197

GRAVY (calculated)

-0.058

Length

148 amino acids

Sequence
(BLAST)

001: MASTALSSAI VNTSFLRRQQ PPLSLRSLPL ANTQSLFGLR SSTARGGRVT AMATYKVKFI TPGGEQEVEC EDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGFIDQ TDQSFLDDDQ MSEGYVLTCV AYPTSDVVIE THKEEAIV

Best Arabidopsis Sequence Match ( AT1G10960.1 )
(BLAST)

001: MASTALSSAI VSTSFLRRQQ TPISLRSLPF ANTQSLFGLK SSTARGGRVT AMATYKVKFI TPEGEQEVEC EEDVYVLDAA EEAGLDLPYS CRAGSCSSCA
101: GKVVSGSIDQ SDQSFLDDEQ MSEGYVLTCV AYPTSDVVIE THKEEAIM

Arabidopsis Description

FD1Ferredoxin-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04090]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.