Factsheet for Bra040469.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013653.1-P
Bra019349.1-P
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60950.1	Bra013653.1-P	AT4G22890.1	18243102
AT1G60950.1	Bra019349.1-P	AT4G22890.1	18243102
AT1G60950.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33318	Canola	plastid	82.18	96.62
Bra031471.1-P	Field mustard	plastid	78.16	91.89
Bra027109.1-P	Field mustard	plastid	77.01	90.54
AT1G60950.1	Thale cress	plastid	76.44	89.86
Bra018415.1-P	Field mustard	plastid	69.54	81.76
GSMUA_Achr5P01200_001	Banana	plastid	56.32	68.53
VIT_12s0035g00270.t01	Wine grape	plastid	54.02	66.2
Solyc10g075160.1.1	Tomato	plastid	53.45	64.58
KRH26360	Soybean	nucleus, plastid	51.15	60.54
Solyc10g044520.1.1	Tomato	plastid	50.0	60.42
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	49.43	59.72
PGSC0003DMT400011522	Potato	plastid	45.98	58.82
Zm00001d035002_P001	Maize	plastid	46.55	58.7
Solyc01g103920.2.1	Tomato	plastid	46.55	57.86
Zm00001d035003_P001	Maize	plastid	45.4	56.43
TraesCS7A01G325500.1	Wheat	plastid	45.98	56.34
TraesCS7B01G226200.1	Wheat	plastid	45.98	56.34
HORVU7Hr1G077750.1	Barley	plastid	45.4	56.03
TraesCS7D01G322100.1	Wheat	plastid	45.4	56.03
EES13198	Sorghum	plastid	45.98	55.56
EES13199	Sorghum	plastid	44.83	54.55
HORVU7Hr1G077740.1	Barley	plastid	44.25	53.85
TraesCS7D01G322000.1	Wheat	plastid	44.25	53.85
TraesCS7A01G325400.1	Wheat	plastid	44.25	53.85
TraesCS7B01G226100.1	Wheat	plastid	44.25	53.85
Zm00001d035001_P001	Maize	plastid	45.98	53.33
Os08t0104600-02	Rice	extracellular	42.53	53.24
KXG24178	Sorghum	plastid	45.98	52.98
PGSC0003DMT400087715	Potato	cytosol, plastid	29.89	50.0
Zm00001d049732_P001	Maize	plastid	43.1	48.39
Bra009066.1-P	Field mustard	cytosol	27.01	47.96
Bra034355.1-P	Field mustard	plastid	37.36	44.52
Bra012013.1-P	Field mustard	plastid	38.51	44.08
Bra000507.1-P	Field mustard	plastid	37.93	42.86
Bra036911.1-P	Field mustard	plastid	25.29	29.14
Bra035490.1-P	Field mustard	plastid	22.99	22.35
Bra023277.1-P	Field mustard	plastid	22.41	21.79

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
EnsemblPlantsGene:Bra040469	EnsemblPlants:Bra040469.1	EnsemblPlants:Bra040469.1-P	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041
InterPro:IPR012675	UniProt:M4FH91	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000253ED19	SEG:seg	:

Description

AT1G60950 (E=5e-050) FED A, ATFD2 | FED A; 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding

Coordinates

chrScaffold000209:+:33284..33808

Molecular Weight (calculated)

18654.8 Da

IEP (calculated)

3.861

GRAVY (calculated)

0.236

Length

174 amino acids

Sequence
(BLAST)

001: MASTALSSAI VGTSFIRRQT APISLRSLPL ANTQSLFGLK SGTTHGGCVI AMATYKVQFI TPEGEQEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDDQ IAEGFVLTCA AYLTFDVTIE THREDDIVLN QSSTTCFDGF IIIVFTFWVE FVAT

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.