CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43040	Soybean	nucleus, plastid	91.84	93.75
VIT_12s0035g00270.t01	Wine grape	plastid	72.11	74.65
Solyc10g044520.1.1	Tomato	plastid	68.71	70.14
PGSC0003DMT400011522	Potato	plastid	64.63	69.85
KRH44081	Soybean	cytosol	47.62	69.31
Solyc01g103920.2.1	Tomato	plastid	65.99	69.29
KRH26361	Soybean	nucleus	68.71	68.71
Solyc10g075160.1.1	Tomato	plastid	64.63	65.97
KRH26360	Soybean	nucleus, plastid	65.31	65.31
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	63.95	65.28
GSMUA_Achr5P01200_001	Banana	plastid	62.59	64.34
Zm00001d035002_P001	Maize	plastid	54.42	57.97
PGSC0003DMT400087715	Potato	cytosol, plastid	40.82	57.69
HORVU7Hr1G077750.1	Barley	plastid	54.42	56.74
TraesCS7D01G322100.1	Wheat	plastid	53.74	56.03
EES13199	Sorghum	plastid	54.42	55.94
TraesCS7A01G325400.1	Wheat	plastid	54.42	55.94
TraesCS7B01G226100.1	Wheat	plastid	54.42	55.94
TraesCS7D01G322000.1	Wheat	plastid	54.42	55.94
HORVU7Hr1G077740.1	Barley	plastid	54.42	55.94
KRH26359	Soybean	mitochondrion, plastid	65.99	55.75
TraesCS7A01G325500.1	Wheat	plastid	53.74	55.63
TraesCS7B01G226200.1	Wheat	plastid	53.74	55.63
EES13198	Sorghum	plastid	52.38	53.47
Os08t0104600-02	Rice	extracellular	49.66	52.52
Zm00001d035003_P001	Maize	plastid	49.66	52.14
KXG24178	Sorghum	plastid	53.06	51.66
Zm00001d035001_P001	Maize	plastid	52.38	51.33
KRH25235	Soybean	plastid	52.38	50.99
KRH30423	Soybean	plastid	53.06	50.32
KRH36019	Soybean	plastid	50.34	48.05
KRG90740	Soybean	plastid	50.34	48.05
Zm00001d049732_P001	Maize	plastid	47.62	45.16
KRH27637	Soybean	mitochondrion, plastid	30.61	30.61
KRH77855	Soybean	plastid	29.93	29.93
KRH58205	Soybean	mitochondrion, plastid	28.57	23.46
KRH04332	Soybean	mitochondrion, plastid	28.57	23.46

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100813636	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	EMBL:ACUP02003303
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	EnsemblPlantsGene:GLYMA_05G168400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	UniProt:I1K498	InterPro:IPR001041
InterPro:IPR012675	EnsemblPlants:KRH59154	ProteinID:KRH59154	ProteinID:KRH59154.1	PFAM:PF00111	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0002339B45	:

Description

hypothetical protein

Coordinates

chr5:-:35891768..35893105

Molecular Weight (calculated)

15839.7 Da

IEP (calculated)

4.180

GRAVY (calculated)

-0.132

Length

147 amino acids

Sequence
(BLAST)

001: MATTAALSGT MVSTSFMRRQ PMTTTSLKTF PNVGEALFGL KSGRGGRVTC MASYKVKLIT PEGEVEFECP DDVFIVDKAE DEGIELPYSC RAGSCVSCVG
101: KIVEGNVDQS DGSFLDDEQI DSGWVLTCVA QPRSDVVIET HKEGEIE

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.