CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04332	Soybean	mitochondrion, plastid	94.97	94.97
GSMUA_Achr5P18450_001	Banana	plastid	64.25	76.67
CDY71732	Canola	cytosol	49.16	71.54
Os03t0685000-01	Rice	plastid	70.39	68.85
Bra035490.1-P	Field mustard	plastid	68.16	68.16
CDX84071	Canola	plastid	67.6	67.6
CDY66059	Canola	plastid	67.6	67.6
VIT_02s0012g00980.t01	Wine grape	plastid	69.83	66.49
Bra023277.1-P	Field mustard	plastid	66.48	66.48
CDX93825	Canola	plastid	66.48	66.48
Solyc08g077050.2.1	Tomato	plastid	69.27	64.92
PGSC0003DMT400045201	Potato	plastid	69.27	64.92
EER93655	Sorghum	plastid	67.04	64.17
TraesCS4D01G025700.1	Wheat	plastid	64.25	62.5
AT1G32550.2	Thale cress	plastid	67.6	62.37
TraesCS4B01G028100.1	Wheat	plastid	64.8	62.37
Zm00001d013534_P002	Maize	plastid	66.48	61.98
TraesCS4A01G286700.1	Wheat	plastid	63.69	61.96
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	64.8	52.49
KRH44081	Soybean	cytosol	18.99	33.66
KRH59154	Soybean	nucleus, plastid	23.46	28.57
KRH43040	Soybean	nucleus, plastid	22.91	28.47
KRH26360	Soybean	nucleus, plastid	22.91	27.89
HORVU4Hr1G004210.8	Barley	cytosol	34.08	27.73
KRH77855	Soybean	plastid	21.79	26.53
KRH26361	Soybean	nucleus	21.79	26.53
KRH27637	Soybean	mitochondrion, plastid	20.67	25.17
KRH26359	Soybean	mitochondrion, plastid	24.02	24.71
KRH36019	Soybean	plastid	21.23	24.68
KRG90740	Soybean	plastid	21.23	24.68
KRH25235	Soybean	plastid	18.99	22.52
KRH30423	Soybean	plastid	18.99	21.94

Protein Annotations

EntrezGene:100791128	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	UniProt:A0A0R0JTR0
EMBL:ACUP02003232	InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	EnsemblPlantsGene:GLYMA_05G112100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041
InterPro:IPR012675	EnsemblPlants:KRH58205	ProteinID:KRH58205	ProteinID:KRH58205.1	PFAM:PF00111	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF10	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001D1670B	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:29768071..29775516

Molecular Weight (calculated)

19829.5 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.349

Length

179 amino acids

Sequence
(BLAST)

001: MALPLLRIPG MPLTNQHQSF PSNTRRKATT AKAELGTAVA RTGGAGYQSP SVDVPTHKVT VHDRQRGIVH EFVVPEDQYI LHTAEAQNIT LPFACRHGCC
101: TSCAVRIKKG QIRQPEALGI SAELRDKGYA LLCVGFPTSD VEVETQDEDE VYWLQFGRYF ARGPVERDDY ALELAMADE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.