Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023277.1-P | Field mustard | plastid | 81.96 | 88.83 |
| CDX93825 | Canola | plastid | 81.96 | 88.83 |
| CDY71732 | Canola | cytosol | 55.15 | 86.99 |
| CDY66059 | Canola | plastid | 79.38 | 86.03 |
| CDX84071 | Canola | plastid | 79.38 | 86.03 |
| Bra035490.1-P | Field mustard | plastid | 78.35 | 84.92 |
| GSMUA_Achr5P18450_001 | Banana | plastid | 57.22 | 74.0 |
| Solyc08g077050.2.1 | Tomato | plastid | 68.56 | 69.63 |
| PGSC0003DMT400045201 | Potato | plastid | 68.04 | 69.11 |
| KRH04332 | Soybean | mitochondrion, plastid | 62.89 | 68.16 |
| KRH58205 | Soybean | mitochondrion, plastid | 62.37 | 67.6 |
| VIT_02s0012g00980.t01 | Wine grape | plastid | 65.46 | 67.55 |
| Os03t0685000-01 | Rice | plastid | 60.82 | 64.48 |
| EER93655 | Sorghum | plastid | 59.79 | 62.03 |
| TraesCS4D01G025700.1 | Wheat | plastid | 57.22 | 60.33 |
| TraesCS4A01G286700.1 | Wheat | plastid | 56.7 | 59.78 |
| Zm00001d013534_P002 | Maize | plastid | 58.76 | 59.38 |
| TraesCS4B01G028100.1 | Wheat | plastid | 56.7 | 59.14 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, vacuole | 60.31 | 52.94 |
| AT1G10960.1 | Thale cress | plastid | 22.68 | 29.73 |
| AT1G60950.1 | Thale cress | plastid | 21.13 | 27.7 |
| HORVU4Hr1G004210.8 | Barley | cytosol | 28.35 | 25.0 |
| AT2G27510.1 | Thale cress | plastid | 19.59 | 24.52 |
| AT4G14890.1 | Thale cress | plastid | 19.07 | 24.03 |
| AT5G10000.1 | Thale cress | plastid | 17.53 | 22.97 |
Protein Annotations
| InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | Gene3D:3.10.20.30 | MapMan:35.1 | EntrezGene:840149 | ProteinID:AEE31502.1 |
| ArrayExpress:AT1G32550 | EnsemblPlantsGene:AT1G32550 | RefSeq:AT1G32550 | TAIR:AT1G32550 | RefSeq:AT1G32550-TAIR-G | EnsemblPlants:AT1G32550.2 |
| TAIR:AT1G32550.2 | InterPro:Beta-grasp_dom_sf | UniProt:F4IE99 | Symbol:FdC1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0022900 | GO:GO:0051536 | InterPro:IPR001041 | InterPro:IPR012675 | RefSeq:NP_001154389.1 | PFAM:PF00111 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51085 | PANTHER:PTHR43112 | PANTHER:PTHR43112:SF10 | SUPFAM:SSF54292 | UniParc:UPI0001A7B276 | : |
Description
FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
Coordinates
chr1:-:11771969..11774117
Molecular Weight (calculated)
21917.1 Da
IEP (calculated)
6.341
GRAVY (calculated)
-0.269
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEDQYIL HSAESQNISL PFACRHGCCT
101: SCAVRVKSGE LRQPQALGIS AELKSQRISS LDLIQCQKTY LTGYALLCVG FPTSDLEVET QDEDEVYWLQ FGRYFARGPI ERDDYALELA MGDE
101: SCAVRVKSGE LRQPQALGIS AELKSQRISS LDLIQCQKTY LTGYALLCVG FPTSDLEVET QDEDEVYWLQ FGRYFARGPI ERDDYALELA MGDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.