CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84071	Canola	plastid	98.32	98.32
Bra035490.1-P	Field mustard	plastid	97.77	97.77
CDX93825	Canola	plastid	89.39	89.39
CDY71732	Canola	cytosol	55.87	81.3
AT1G32550.2	Thale cress	plastid	86.03	79.38
GSMUA_Achr5P18450_001	Banana	plastid	62.57	74.67
PGSC0003DMT400045201	Potato	plastid	74.86	70.16
Solyc08g077050.2.1	Tomato	plastid	73.74	69.11
VIT_02s0012g00980.t01	Wine grape	plastid	71.51	68.09
KRH58205	Soybean	mitochondrion, plastid	67.6	67.6
KRH04332	Soybean	mitochondrion, plastid	67.6	67.6
Os03t0685000-01	Rice	plastid	67.6	66.12
EER93655	Sorghum	plastid	65.36	62.57
TraesCS4A01G286700.1	Wheat	plastid	64.25	62.5
TraesCS4D01G025700.1	Wheat	plastid	63.69	61.96
TraesCS4B01G028100.1	Wheat	plastid	64.25	61.83
Zm00001d013534_P002	Maize	plastid	63.69	59.38
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	65.92	53.39
CDY20975	Canola	plastid	25.7	31.08
CDY29779	Canola	plastid	22.91	28.47
CDX97925	Canola	plastid	23.46	28.38
CDY03773	Canola	plastid	23.46	28.38
CDY44833	Canola	plastid	23.46	28.38
CDY46194	Canola	plastid	23.46	28.38
CDY54579	Canola	plastid	23.46	28.38
CDY54581	Canola	plastid	23.46	28.38
CDY12877	Canola	plastid	23.46	28.38
CDY20591	Canola	plastid	23.46	28.38
CDY19334	Canola	plastid	21.23	27.34
CDY42796	Canola	plastid	22.91	27.15
CDX71446	Canola	plastid	22.91	26.97
CDY33318	Canola	plastid	21.79	26.35
HORVU4Hr1G004210.8	Barley	cytosol	31.84	25.91
CDY04500	Canola	plastid	21.79	25.66
CDX83271	Canola	plastid	20.67	24.03
CDY31182	Canola	plastid	20.67	24.03
CDY30545	Canola	plastid	20.67	23.87
CDX77119	Canola	plastid	20.11	23.08
CDY21622	Canola	plastid	18.99	22.82
CDX69869	Canola	plastid	18.44	22.3

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	GO:A0A078JH74	UniProt:A0A078JH74
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY66059	ProteinID:CDY66059	ProteinID:CDY66059.1	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00051251001	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF10	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0004EE2854	:	:

Description

BnaA08g30050DFerredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078JH74]

Coordinates

chrLK035061:+:11563..13232

Molecular Weight (calculated)

20087.7 Da

IEP (calculated)

5.630

GRAVY (calculated)

-0.339

Length

179 amino acids

Sequence
(BLAST)

001: MALAFPCTFC TPFQLKTSPI NRRYSRSIRP QATSSEFRIP VEISSPADRG SLAVPTHKVT VHDRKRGVVH EFEVPEDQYI LHSAESQNIT LPFACRHGCC
101: TSCAVRVKSG ELRQPQALGI SAELKSQGYA LLCVGFPTSD LEVETQDEDE VYWLQFGRYF ARGPIERDDY ALELAMGDE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.