Factsheet for GSMUA_Achr5P18450_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71732	Canola	cytosol	60.0	73.17
VIT_02s0012g00980.t01	Wine grape	plastid	81.33	64.89
Os03t0685000-01	Rice	plastid	78.67	64.48
KRH58205	Soybean	mitochondrion, plastid	76.67	64.25
Bra035490.1-P	Field mustard	plastid	75.33	63.13
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	92.67	62.9
CDX84071	Canola	plastid	74.67	62.57
CDY66059	Canola	plastid	74.67	62.57
KRH04332	Soybean	mitochondrion, plastid	74.67	62.57
EER93655	Sorghum	plastid	78.0	62.57
Bra023277.1-P	Field mustard	plastid	74.0	62.01
CDX93825	Canola	plastid	74.0	62.01
Solyc08g077050.2.1	Tomato	plastid	78.0	61.26
PGSC0003DMT400045201	Potato	plastid	78.0	61.26
Zm00001d013534_P002	Maize	plastid	77.33	60.42
TraesCS4A01G286700.1	Wheat	plastid	71.33	58.15
TraesCS4D01G025700.1	Wheat	plastid	71.33	58.15
TraesCS4B01G028100.1	Wheat	plastid	72.0	58.06
AT1G32550.2	Thale cress	plastid	74.0	57.22
GSMUA_Achr8P32490_001	Banana	cytosol	18.0	39.13
GSMUA_Achr5P00940_001	Banana	cytosol	24.67	37.76
GSMUA_Achr11P...	Banana	cytosol	21.33	31.68
HORVU4Hr1G004210.8	Barley	cytosol	35.33	24.09
GSMUA_Achr5P01200_001	Banana	plastid	21.33	22.38
GSMUA_Achr11P...	Banana	plastid	25.33	14.39

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G18450_001	EnsemblPlants:GSMUA_Achr5P18450_001	EnsemblPlants:GSMUA_Achr5T18450_001	InterPro:IPR001041	InterPro:IPR012675
UniProt:M0SZM4	PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF10	SUPFAM:SSF54292
TIGRFAMs:TIGR02008	UniParc:UPI0002967127	SEG:seg	:	:	:

Description

Putative Ferredoxin-2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18450_001]

Coordinates

chr5:+:19874861..19876892

Molecular Weight (calculated)

16609.4 Da

IEP (calculated)

4.803

GRAVY (calculated)

-0.271

Length

150 amino acids

Sequence
(BLAST)

001: MTVRAELQTT NPTSAATVTS SSSSIATHRV TVHDRQRGIV HEFVVPEDQY ILHTAESQNI SLPFACRHGC CTSCAVRVRS GQIRQPEALG ISAELKAKGY
101: ALLCVGFPSS DIEVETQDED EVYWLQFGRY FARGPIERDD YALELAMGDE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.