Factsheet for GSMUA_Achr5P00940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	83.67	81.19
Solyc11g068430.1.1	Tomato	nucleus	78.57	62.1
GSMUA_Achr8P32490_001	Banana	cytosol	40.82	57.97
PGSC0003DMT400015058	Potato	plastid	79.59	51.66
PGSC0003DMT400067774	Potato	plastid	77.55	50.67
KRH25235	Soybean	plastid	76.53	49.67
KRH30423	Soybean	plastid	75.51	47.74
VIT_13s0147g00110.t01	Wine grape	plastid	79.59	46.43
VIT_06s0080g00410.t01	Wine grape	plastid	83.67	45.56
GSMUA_Achr5P01200_001	Banana	plastid	66.33	45.45
GSMUA_Achr11P...	Banana	plastid	81.63	30.3
GSMUA_Achr5P18450_001	Banana	plastid	37.76	24.67
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	37.76	16.74

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G00940_001	EnsemblPlants:GSMUA_Achr5P00940_001	EnsemblPlants:GSMUA_Achr5T00940_001	InterPro:IPR001041
InterPro:IPR012675	UniProt:M0SUM3	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0002949D5E	:	:

Description

Ferredoxin-3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G00940_001]

Coordinates

chr5:+:551425..552013

Molecular Weight (calculated)

10588.2 Da

IEP (calculated)

3.961

GRAVY (calculated)

-0.235

Length

98 amino acids

Sequence
(BLAST)

1: MAVYTVKLID PEGQEHEFEA PDDTYILDAA EAAGVDLPYS CRAGACSTCA GQMVSGNVDQ SDGSFLDESQ MAKGYLLTCV SYPRSDCIIH THKEGDLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.