CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83271	Canola	plastid	96.75	96.75
CDY04500	Canola	plastid	88.96	90.13
CDX71446	Canola	plastid	87.66	88.82
CDY30545	Canola	plastid	88.31	87.74
AT2G27510.1	Thale cress	plastid	87.66	87.1
CDX77119	Canola	plastid	87.01	85.9
CDY20591	Canola	plastid	48.7	50.68
Os04t0412200-01	Rice	plastid	49.35	50.0
CDX97925	Canola	plastid	48.05	50.0
CDY20975	Canola	plastid	48.05	50.0
CDY19334	Canola	plastid	44.81	49.64
CDY44833	Canola	plastid	47.4	49.32
CDY12877	Canola	plastid	47.4	49.32
HORVU2Hr1G072880.1	Barley	plastid	48.05	49.01
TraesCS2B01G311100.1	Wheat	plastid	47.4	48.67
TraesCS2D01G292400.1	Wheat	plastid	47.4	48.67
CDY03773	Canola	plastid	46.75	48.65
CDY46194	Canola	plastid	46.75	48.65
EES10739	Sorghum	plastid	48.05	47.44
Zm00001d025352_P001	Maize	plastid	47.4	47.4
CDY54579	Canola	plastid	45.45	47.3
CDY54581	Canola	plastid	45.45	47.3
Zm00001d003797_P001	Maize	plastid	47.4	47.1
CDY33318	Canola	plastid	42.86	44.59
CDX69869	Canola	plastid	39.61	41.22
CDY21622	Canola	plastid	39.61	40.94
CDY29779	Canola	plastid	31.82	34.03
CDY42796	Canola	plastid	32.47	33.11
CDY71732	Canola	cytosol	18.18	22.76
CDY66059	Canola	plastid	24.03	20.67
CDX93825	Canola	plastid	24.03	20.67
CDX84071	Canola	plastid	24.03	20.67

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	GO:A0A078H117
UniProt:A0A078H117	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY31182	ProteinID:CDY31182	ProteinID:CDY31182.1	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00047291001	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0004EB6B2C

Description

BnaC03g47090DFerredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078H117]

Coordinates

chrLK032268:-:173311..173944

Molecular Weight (calculated)

16640.5 Da

IEP (calculated)

5.197

GRAVY (calculated)

-0.323

Length

154 amino acids

Sequence
(BLAST)

001: MATVRVSSTS MTKAVLRSQP TNKLITNKSQ HVSVGSVNKV SRSFGLKCSA YSGATMSAVY KVKLIGPDGQ ENEFDVQDDQ YILDAAEEAG VDLPYSCRAG
101: ACSTCAGKIE KGQVDQSDGS FLEDDHMDKG YVLTCVAYPQ SDCVIHTHKE TELF

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.