Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10960.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G10960.1 | CDY36943 | AT3G47620.1 | 21798944 |
| AT1G10960.1 | CDY32970 | AT5G42980.1 | 15352244 |
| AT1G10960.1 | CDY43592 | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19334 | Canola | plastid | 83.11 | 88.49 |
| AT1G10960.1 | Thale cress | plastid | 83.11 | 83.11 |
| CDY03773 | Canola | plastid | 81.08 | 81.08 |
| CDY44833 | Canola | plastid | 80.41 | 80.41 |
| CDY46194 | Canola | plastid | 80.41 | 80.41 |
| CDY20591 | Canola | plastid | 79.73 | 79.73 |
| CDY54579 | Canola | plastid | 79.73 | 79.73 |
| CDY54581 | Canola | plastid | 79.73 | 79.73 |
| CDY12877 | Canola | plastid | 79.05 | 79.05 |
| CDY20975 | Canola | plastid | 78.38 | 78.38 |
| CDY33318 | Canola | plastid | 76.35 | 76.35 |
| VIT_12s0035g00270.t01 | Wine grape | plastid | 62.84 | 65.49 |
| GSMUA_Achr5P01200_001 | Banana | plastid | 62.16 | 64.34 |
| KRH26360 | Soybean | nucleus, plastid | 62.16 | 62.59 |
| Solyc10g075160.1.1 | Tomato | plastid | 60.81 | 62.5 |
| PGSC0003DMT400031198 | Potato | cytosol, extracellular, plastid | 57.43 | 59.03 |
| PGSC0003DMT400011522 | Potato | plastid | 54.05 | 58.82 |
| Zm00001d035002_P001 | Maize | plastid | 53.38 | 57.25 |
| Solyc01g103920.2.1 | Tomato | plastid | 54.05 | 57.14 |
| Solyc10g044520.1.1 | Tomato | plastid | 55.41 | 56.94 |
| TraesCS7A01G325500.1 | Wheat | plastid | 53.38 | 55.63 |
| TraesCS7B01G226200.1 | Wheat | plastid | 53.38 | 55.63 |
| HORVU7Hr1G077750.1 | Barley | plastid | 52.7 | 55.32 |
| TraesCS7D01G322100.1 | Wheat | plastid | 52.7 | 55.32 |
| EES13198 | Sorghum | plastid | 53.38 | 54.86 |
| Zm00001d049732_P001 | Maize | plastid | 56.76 | 54.19 |
| TraesCS7D01G322000.1 | Wheat | plastid | 52.03 | 53.85 |
| HORVU7Hr1G077740.1 | Barley | plastid | 52.03 | 53.85 |
| TraesCS7B01G226100.1 | Wheat | plastid | 52.03 | 53.85 |
| TraesCS7A01G325400.1 | Wheat | plastid | 52.03 | 53.85 |
| EES13199 | Sorghum | plastid | 51.35 | 53.15 |
| Zm00001d035003_P001 | Maize | plastid | 50.0 | 52.86 |
| PGSC0003DMT400087715 | Potato | cytosol, plastid | 36.49 | 51.92 |
| Os08t0104600-02 | Rice | extracellular | 48.65 | 51.8 |
| KXG24178 | Sorghum | plastid | 52.7 | 51.66 |
| Zm00001d035001_P001 | Maize | plastid | 51.35 | 50.67 |
| CDY04500 | Canola | plastid | 50.68 | 49.34 |
| CDX71446 | Canola | plastid | 50.68 | 49.34 |
| CDY31182 | Canola | plastid | 50.0 | 48.05 |
| CDX83271 | Canola | plastid | 48.65 | 46.75 |
| CDY30545 | Canola | plastid | 48.65 | 46.45 |
| CDX77119 | Canola | plastid | 47.97 | 45.51 |
| CDX69869 | Canola | plastid | 37.16 | 37.16 |
| CDY21622 | Canola | plastid | 36.49 | 36.24 |
| CDY29779 | Canola | plastid | 29.05 | 29.86 |
| CDY42796 | Canola | plastid | 29.05 | 28.48 |
| CDX84071 | Canola | plastid | 28.38 | 23.46 |
| CDY66059 | Canola | plastid | 28.38 | 23.46 |
| CDY71732 | Canola | cytosol | 18.92 | 22.76 |
| CDX93825 | Canola | plastid | 27.03 | 22.35 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | GO:A0A078E733 |
| InterPro:Beta-grasp_dom_sf | EnsemblPlants:CDX97925 | ProteinID:CDX97925 | ProteinID:CDX97925.1 | InterPro:Fd_pln | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0022900 | GO:GO:0046872 | GO:GO:0051536 | GO:GO:0051537 | GO:GO:0055114 |
| EnsemblPlantsGene:GSBRNA2T00105272001 | InterPro:IPR001041 | InterPro:IPR012675 | PFAM:PF00111 | ScanProsite:PS00197 | PFscan:PS51085 |
| PANTHER:PTHR43112 | PANTHER:PTHR43112:SF4 | SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | UniParc:UPI0004EDB665 | SEG:seg |
Description
BnaA06g06760D
Coordinates
chrLK031902:+:83759..84368
Molecular Weight (calculated)
15637.3 Da
IEP (calculated)
4.413
GRAVY (calculated)
-0.117
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTALSSVT VSTPFLRRQQ TPNSLRSLPA ANTQSLFGLK SSTSRGGRVT AMATYKVKFI TPDGEKEVEC DGDTYVLDAA EESGLDLPYS CRAGACSSCA
101: GKIVSGSVDQ SDQSFLDDGQ ISEGFVLTCI ALPTSDVVIR THQEDAMI
101: GKIVSGSVDQ SDQSFLDDGQ ISEGFVLTCI ALPTSDVVIR THQEDAMI
001: MASTALSSAI VSTSFLRRQQ TPISLRSLPF ANTQSLFGLK SSTARGGRVT AMATYKVKFI TPEGEQEVEC EEDVYVLDAA EEAGLDLPYS CRAGSCSSCA
101: GKVVSGSIDQ SDQSFLDDEQ MSEGYVLTCV AYPTSDVVIE THKEEAIM
101: GKVVSGSIDQ SDQSFLDDEQ MSEGYVLTCV AYPTSDVVIE THKEEAIM
Arabidopsis Description
FD1Ferredoxin-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04090]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.