CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003797_P001	Maize	plastid	83.33	83.87
Zm00001d025352_P001	Maize	plastid	81.41	82.47
HORVU2Hr1G072880.1	Barley	plastid	71.79	74.17
TraesCS2D01G292400.1	Wheat	plastid	70.51	73.33
TraesCS2B01G311100.1	Wheat	plastid	70.51	73.33
Os04t0412200-01	Rice	plastid	66.67	68.42
EER93144	Sorghum	plastid	53.21	54.97
EES13199	Sorghum	plastid	47.44	51.75
KXG24178	Sorghum	plastid	47.44	49.01
Bra012013.1-P	Field mustard	plastid	47.44	48.68
CDX71446	Canola	plastid	47.44	48.68
CDY04500	Canola	plastid	47.44	48.68
CDY31182	Canola	plastid	47.44	48.05
EES13198	Sorghum	plastid	44.23	47.92
Bra000507.1-P	Field mustard	plastid	46.79	47.4
CDX83271	Canola	plastid	46.79	47.4
AT2G27510.1	Thale cress	plastid	46.15	46.45
Bra034355.1-P	Field mustard	plastid	42.95	45.89
CDX77119	Canola	plastid	44.87	44.87
CDY30545	Canola	plastid	44.23	44.52
EES01793	Sorghum	plastid	46.79	44.24
EES19611	Sorghum	plastid	44.87	43.21
EER93719	Sorghum	plastid	27.56	28.86
EER93655	Sorghum	plastid	21.15	17.65

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	EntrezGene:8072966
InterPro:Beta-grasp_dom_sf	UniProt:C5YFU9	EnsemblPlants:EES10739	ProteinID:EES10739	ProteinID:EES10739.1	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF2	EnsemblPlantsGene:SORBI_3006G069000	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001A86EDC
RefSeq:XP_002446411.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:43203448..43206618

Molecular Weight (calculated)

16897.9 Da

IEP (calculated)

4.703

GRAVY (calculated)

-0.217

Length

156 amino acids

Sequence
(BLAST)

001: MATFTSPVLC NFMTIQQKST PLLNNNSTKR PQHLSFPRTS RSVPTTLPGF RARQDLRVAA VYKVKLVGPE GQESVIDVPE DSYILDAAEE AGVELPYSCR
101: AGACSTCAGK VLEGSVDQSD QSFLDDTQVG AGYALTCVAY PTSDCVIQTH READLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.