CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012293_P001	Maize	plastid	70.3	78.38
HORVU3Hr1G084210.1	Barley	plastid	63.64	70.47
Solyc05g055280.1.1	Tomato	cytosol	41.82	70.41
TraesCS3A01G373900.1	Wheat	mitochondrion	60.0	69.72
TraesCS3D01G366600.1	Wheat	plastid	64.85	69.48
TraesCS3B01G406100.1	Wheat	plastid	64.85	69.48
Os01t0860601-01	Rice	plastid	63.03	63.03
Solyc11g006910.1.1	Tomato	mitochondrion, plastid	43.03	56.8
EES19611	Sorghum	plastid	53.94	54.94
Bra009066.1-P	Field mustard	cytosol	32.12	54.08
PGSC0003DMT400061612	Potato	plastid	45.45	50.0
PGSC0003DMT400060121	Potato	plastid	44.85	49.33
EER93144	Sorghum	plastid	44.85	49.01
EES13199	Sorghum	plastid	41.21	47.55
EES13198	Sorghum	plastid	41.21	47.22
EES10739	Sorghum	plastid	44.24	46.79
Solyc04g009710.1.1	Tomato	plastid	41.21	44.16
KXG24178	Sorghum	plastid	38.18	41.72
CDY21622	Canola	plastid	35.15	38.93
CDX69869	Canola	plastid	33.33	37.16
AT5G10000.1	Thale cress	plastid	33.33	37.16
EER93719	Sorghum	plastid	27.27	30.2
EER93655	Sorghum	plastid	27.27	24.06

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	EntrezGene:8062358
InterPro:Beta-grasp_dom_sf	UniProt:C5XQJ3	EnsemblPlants:EES01793	ProteinID:EES01793	ProteinID:EES01793.1	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF7	EnsemblPlantsGene:SORBI_3003G364400	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001A84ED5
RefSeq:XP_002456673.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:68146129..68146626

Molecular Weight (calculated)

17115.2 Da

IEP (calculated)

4.800

GRAVY (calculated)

0.039

Length

165 amino acids

Sequence
(BLAST)

001: MATAAAATIM YCVPAASAIR CCRTFSPPIK TDAPRVASPA PRPAAILAWG AGAGAARVAS RGRFRASAAV HKVKLVGPDG SESELEVAED TYILDAAEEA
101: GLELPFSCRA GSCSSCAGKL ASGEVDQSDG SFLDDAQMAE GYVLTCVSYP RADCVIYTHK EEEVH

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.