CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44081	Soybean	cytosol	53.06	77.23
KRH43040	Soybean	nucleus, plastid	68.71	70.14
KRH59154	Soybean	nucleus, plastid	68.71	68.71
KRH26360	Soybean	nucleus, plastid	67.35	67.35
GSMUA_Achr5P01200_001	Banana	plastid	64.63	66.43
KRH26359	Soybean	mitochondrion, plastid	72.79	61.49
Zm00001d035002_P001	Maize	plastid	57.14	60.87
TraesCS7B01G226200.1	Wheat	plastid	58.5	60.56
TraesCS7A01G325500.1	Wheat	plastid	58.5	60.56
EES13198	Sorghum	plastid	59.18	60.42
TraesCS7D01G322100.1	Wheat	plastid	57.82	60.28
HORVU7Hr1G077750.1	Barley	plastid	57.82	60.28
TraesCS7A01G325400.1	Wheat	plastid	57.14	58.74
HORVU7Hr1G077740.1	Barley	plastid	57.14	58.74
TraesCS7B01G226100.1	Wheat	plastid	57.14	58.74
EES13199	Sorghum	plastid	57.14	58.74
TraesCS7D01G322000.1	Wheat	plastid	57.14	58.74
Os08t0104600-02	Rice	extracellular	54.42	57.55
Zm00001d035003_P001	Maize	plastid	53.06	55.71
KXG24178	Sorghum	plastid	56.46	54.97
Zm00001d035001_P001	Maize	plastid	55.78	54.67
KRH25235	Soybean	plastid	53.74	52.32
KRG90740	Soybean	plastid	54.42	51.95
KRH36019	Soybean	plastid	53.74	51.3
KRH30423	Soybean	plastid	53.06	50.32
Zm00001d049732_P001	Maize	plastid	51.7	49.03
KRH27637	Soybean	mitochondrion, plastid	31.29	31.29
KRH77855	Soybean	plastid	29.25	29.25
KRH04332	Soybean	mitochondrion, plastid	27.21	22.35
KRH58205	Soybean	mitochondrion, plastid	26.53	21.79

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100808254	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
EMBL:ACUP02007709	InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	EnsemblPlantsGene:GLYMA_12G1696001	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	UniProt:I1LTF4
InterPro:IPR001041	InterPro:IPR012675	EnsemblPlants:KRH26361	ProteinID:KRH26361	ProteinID:KRH26361.1	PFAM:PF00111
ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008
UniParc:UPI0001CA9F8C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:32446211..32446852

Molecular Weight (calculated)

15489.3 Da

IEP (calculated)

4.288

GRAVY (calculated)

0.012

Length

147 amino acids

Sequence
(BLAST)

001: MATTAALCGT MMSSSFLRRK AVVTSLKAFP NANAVFGVKG GRGGGVTAMA SFKVKLITPE GEKEFECPDD VYILDQAEEE GLELPYSCRA GSCSVCAGKV
101: VSGKVDNSDA TFLEDEQLEA GFTLTCVAYP TSDVVIETHK EEDLSAA

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.