Factsheet for Zm00001d011833_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
extracellular: 22192489

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT1G20020.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT1G20020.1	Zm00001d034904_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d034904_P001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04249	Sorghum	plastid	86.18	86.41
Zm00001d045575_P001	Maize	plastid	74.53	77.46
TraesCS6B01G015000.1	Wheat	plastid	75.88	77.14
TraesCS6D01G012200.1	Wheat	plastid, unclear	75.34	77.01
GSMUA_Achr11P...	Banana	plastid	74.53	76.82
GSMUA_Achr1P02830_001	Banana	plastid	74.8	76.67
TraesCS6A01G009200.1	Wheat	plastid	75.07	76.31
KRH08061	Soybean	nucleus, plastid	74.25	75.69
VIT_04s0023g03510.t01	Wine grape	plastid	73.71	75.14
KRH69775	Soybean	plastid	73.71	75.14
KRH28804	Soybean	plastid	73.71	75.14
AT5G66190.1	Thale cress	plastid	73.17	75.0
Solyc02g062130.2.1	Tomato	plastid	73.17	74.59
CDX81408	Canola	plastid	73.17	74.38
PGSC0003DMT400009192	Potato	extracellular	72.9	74.31
CDY18592	Canola	plastid	72.9	74.31
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	72.9	74.1
Bra037182.1-P	Field mustard	plastid	72.9	74.1
Os02t0103800-01	Rice	plastid	72.36	72.95
HORVU6Hr1G000620.2	Barley	plastid	76.15	70.25
Bra016481.1-P	Field mustard	plastid	68.29	69.23
AT1G20020.1	Thale cress	plastid	69.11	69.11
Bra012203.1-P	Field mustard	plastid	68.56	68.94
CDY57601	Canola	plastid	68.56	68.94
CDY43420	Canola	plastid	66.67	67.58
Solyc02g083810.2.1	Tomato	plastid	67.48	67.3
CDX83730	Canola	plastid	68.56	67.11
CDY62940	Canola	plastid	67.21	66.85
GSMUA_Achr8P13460_001	Banana	plastid	75.34	65.88
Zm00001d042049_P001	Maize	plastid	82.11	62.22
CDY55097	Canola	vacuole	62.6	60.95
Zm00001d023296_P002	Maize	plastid	33.06	49.19
CDX83820	Canola	endoplasmic reticulum, plasma membrane	20.6	43.93
Zm00001d005458_P003	Maize	plastid	23.58	42.86
Zm00001d034345_P001	Maize	plastid	42.55	40.05
Zm00001d018794_P003	Maize	plastid	43.09	39.36
Zm00001d034099_P002	Maize	plastid	38.48	38.38
CDY57760	Canola	plastid	71.0	26.1

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	EntrezGene:100282643	Gene3D:2.40.30.10	Gene3D:3.40.50.80	PDB:3VO2
ProteinID:AQK98108.1	UniProt:B4FUM2	EMBL:BT040810	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314
PANTHER:PTHR43314:SF3	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI00017B7AD9	EnsemblPlantsGene:Zm00001d011833
EnsemblPlants:Zm00001d011833_P001	EnsemblPlants:Zm00001d011833_T001	SEG:seg	:	:	:

Description

Ferredoxin--NADP reductase leaf isozyme 1 chloroplastic

Coordinates

chr8:-:162293750..162297261

Molecular Weight (calculated)

40691.7 Da

IEP (calculated)

8.522

GRAVY (calculated)

-0.399

Length

369 amino acids

Sequence
(BLAST)

001: MAAVTAAAIS LSSSSASSPA AAAKAKAASP SSSPCRHLQF LSAASPRRRW RAGARAVRAQ VSTTETAAAG PAKTSKKQDE GLVTNKYKPK EPYVGRCLSN
101: TRITGDDAPG ETWHMVFSTE GEIPYREGQS IGIIADGEDK NGKPHKLRLY SIASSALGDF GDSKTVSLCV KRLVYTNDQG EIVKGVCSNF LCDLKPGADV
201: KITGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF LEEHEDYKFS GLAWLFLGVP TSDSLLYKEE LEKMKEMAPD NFRLDFAVSR EQTNAAGEKM
301: YIQTRMAEYR EELWELLKKD NTYVYMCGLK GMEKGIDDIM LNLAAKDGID WMQYKKQLKK GEQWNVEVY

Best Arabidopsis Sequence Match ( AT1G20020.2 )
(BLAST)

001: MVFSHQGEIP YREGQSVGVI ADGIDKNGKP HKVRLYSIAS SALGDLGNSE TVSLCVKRLV YTNDQGETVK GVCSNFLCDL APGSDVKLTG PVGKEMLMPK
101: DPNATVIMLA TGTGIAPFRS FLWKMFFEKH DDYKFNGLAW LFLGVPTTSS LLYQEEFDKM KAKAPENFRV DYAISREQAN DKGEKMYIQT RMAQYAAELW
201: ELLKKDNTFV YMCGLKGMEK GIDDIMVSLA ANDGIDWFDY KKQLKKAEQW NVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.