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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 cytosol: 22313117
extracellular: 22313117
extracellular: 24773703
extracellular: 28248230
msms PMID: 28248230 doi
E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
msms PMID: 24773703 doi
T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson
Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400032525
PGSC0003DMT400058521

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66190.1 PGSC0003DMT400032525 AT4G22890.1 18243102
AT5G66190.1 PGSC0003DMT400058521 AT4G22890.1 18243102
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g083810.2.1 Tomato plastid 93.37 91.35
KRH28804 Soybean plastid 87.85 87.85
VIT_04s0023g03510.t01 Wine grape plastid 87.57 87.57
KRH69775 Soybean plastid 85.08 85.08
KRH08061 Soybean nucleus, plastid 85.08 85.08
VIT_18s0001g14450.t01 Wine grape cytosol, plastid 83.43 83.2
GSMUA_Achr11P... Banana plastid 79.28 80.17
GSMUA_Achr1P02830_001 Banana plastid 79.56 80.0
AT5G66190.1 Thale cress plastid 79.28 79.72
CDY18592 Canola plastid 79.01 79.01
Bra037182.1-P Field mustard plastid 79.01 78.79
CDX81408 Canola plastid 79.01 78.79
Os06t0107700-01 Rice plastid 75.41 75.41
TraesCS6B01G015000.1 Wheat plastid 75.14 74.93
Zm00001d045575_P001 Maize plastid 73.48 74.93
EES04249 Sorghum plastid 75.97 74.73
TraesCS7D01G016800.1 Wheat plastid 74.59 74.59
TraesCS6D01G012200.1 Wheat plastid, unclear 74.31 74.52
EER89050 Sorghum plastid 73.76 73.96
TraesCS6A01G009200.1 Wheat plastid 74.03 73.83
TraesCS7A01G020500.1 Wheat plastid 72.93 73.13
Zm00001d011833_P001 Maize plastid 74.31 72.9
TraesCS4A01G472500.1 Wheat plastid 72.1 72.1
Os02t0103800-01 Rice plastid 71.82 71.04
HORVU7Hr1G002210.8 Barley plastid 69.06 69.44
GSMUA_Achr8P13460_001 Banana plastid 80.11 68.72
HORVU6Hr1G000620.2 Barley plastid 73.76 66.75
CDY55097 Canola vacuole 68.51 65.44
Zm00001d042049_P001 Maize plastid 75.41 56.06
CDX83820 Canola endoplasmic reticulum, plasma membrane 20.72 43.35
PGSC0003DMT400010484 Potato plastid 44.2 42.78
PGSC0003DMT400030830 Potato extracellular, plastid 43.92 42.51
CDY57760 Canola plastid 77.9 28.09
Protein Annotations
KEGG:00195+1.18.1.2MapMan:1.1.5.2.1EntrezGene:102591399Gene3D:2.40.30.10Gene3D:3.40.50.80InterPro:FNR
InterPro:FNR_plant_CyanobacteriaInterPro:Fd_Rdtase_FAD-bdInterPro:Flavoprot_Pyr_Nucl_cyt_RdtaseGO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003824GO:GO:0004324GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005576
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0008266GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009536
GO:GO:0009570GO:GO:0009579GO:GO:0009605GO:GO:0009607GO:GO:0009767GO:GO:0009941
GO:GO:0009987GO:GO:0015979GO:GO:0016020GO:GO:0016491GO:GO:0019904GO:GO:0031977
GO:GO:0042742GO:GO:0045156GO:GO:0045157GO:GO:0048046GO:GO:0055114InterPro:IPR017927
UniProt:M0ZVR1InterPro:OxRdtase_FAD/NAD-bdPFAM:PF00175EnsemblPlantsGene:PGSC0003DMG402003567PGSC:PGSC0003DMG402003567EnsemblPlants:PGSC0003DMT400009192
PIRSF:PIRSF000361PIRSF:PIRSF501178PRINTS:PR00371PFscan:PS51384PANTHER:PTHR43314PANTHER:PTHR43314:SF7
InterPro:Riboflavin_synthase-like_b-brlSUPFAM:SSF52343SUPFAM:SSF63380UniParc:UPI000295B085RefSeq:XP_006340740.1SEG:seg
Description
Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG402003567]
Coordinates
chr2:-:39306461..39309779
Molecular Weight (calculated)
40459.6 Da
IEP (calculated)
8.410
GRAVY (calculated)
-0.361
Length
362 amino acids
Sequence
(BLAST)
001: MATAVSAAVS LPSSKSTSFS SRTSIISTDK INFNKVPLYY RNVSGGSRLV SIRAQVTTEA PAKVEKISKK QDEGVIVNKF RPKEPYVGRC LLNTKITGDD
101: APGETWHMVF STEGEVPYRE GQSIGVIADG VDANGKPHKL RLYSIASSAL GDFGDSKTVS LCVKRLVYTN DKGEEVKGVC SNFLCDLKPG AEVKITGPVG
201: KEMLMPKDPN ATVIMLATGT GIAPFRSFLW KMFFEKHEDY KFNGTAWLFL GVPTSSSLLY KEEFEKMKEK APENFRLDFA VSREQTNEKG EKMYIQTRMA
301: QYAEELWTLL QKDNTFIYMC GLKGMEQGID EIMSALAERD GIVWADYKKQ LKKAEQWNVE VY
Best Arabidopsis Sequence Match ( AT1G20020.1 )
(BLAST)
001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GEIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY
Arabidopsis Description
LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.