Factsheet for PGSC0003DMT400030830

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g024050.2.1	Tomato	extracellular	98.13	98.13
PGSC0003DMT400010484	Potato	plastid	94.65	94.65
KRH11782	Soybean	nucleus, plastid	82.62	81.96
KRH36793	Soybean	plastid	81.28	80.64
VIT_10s0003g04880.t01	Wine grape	plastid	80.21	79.58
AT4G05390.1	Thale cress	plastid	78.07	77.25
Os07t0147900-01	Rice	plastid	78.07	77.25
CDY46362	Canola	plastid	77.81	76.98
GSMUA_Achr4P28350_001	Banana	plastid	76.74	76.94
CDY39167	Canola	plastid	77.54	76.72
Bra029574.1-P	Field mustard	plastid	77.54	76.72
AT1G30510.2	Thale cress	plastid	78.34	76.7
CDY09570	Canola	plastid	77.54	75.92
EER90782	Sorghum	plastid	76.74	75.53
CDY02299	Canola	plastid	77.01	75.39
GSMUA_Achr4P31670_001	Banana	plastid	76.74	75.33
OQU88435	Sorghum	plastid	76.47	75.07
Os03t0784700-01	Rice	plastid	75.67	74.87
TraesCS2A01G252800.1	Wheat	plastid	74.87	74.27
TraesCS2D01G253400.1	Wheat	golgi	74.87	74.07
TraesCS5B01G424900.1	Wheat	plastid	72.99	73.19
TraesCS5D01G431300.1	Wheat	plastid	73.53	73.14
Zm00001d034345_P001	Maize	plastid	76.2	72.7
TraesCS5A01G423000.1	Wheat	plastid	72.99	72.61
HORVU5Hr1G103180.1	Barley	plastid	72.99	70.73
Zm00001d018794_P003	Maize	plastid	75.67	70.05
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	76.74	68.66
HORVU2Hr1G038830.1	Barley	plastid	75.67	65.81
CDY51794	Canola	plastid	41.44	64.05
TraesCS2B01G272500.1	Wheat	plastid	35.29	60.0
PGSC0003DMT400009192	Potato	extracellular	42.51	43.92
CDY20886	Canola	mitochondrion, plastid	24.06	41.67
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.87	39.57

Protein Annotations

KEGG:00195+1.18.1.2	EntrezGene:102579393	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	ncoils:Coil
InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0004324	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927
UniProt:M1AUU9	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	EnsemblPlantsGene:PGSC0003DMG400011811	PGSC:PGSC0003DMG400011811	EnsemblPlants:PGSC0003DMT400030830
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI000296B245	RefSeq:XP_006363650.1	:

Description

Ferredoxin--NADP reductase, root-type isozyme, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400011811]

Coordinates

chr2:+:13913577..13919557

Molecular Weight (calculated)

41743.8 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.502

Length

374 amino acids

Sequence
(BLAST)

001: MAHSAISQVS VAVPLQTDSS FRRSTFKATS LTFSDKSCIS MPSIDLKATR SRSQYIVCMS VQHASKAKVS VSPLSLEDAK EPPLNIYKPK EPYTATIVSV
101: ERIVGPKAPG ETCHIVIDHD GNLPYWEGQS YGVVPPGENP KKPGSPHNVR LYSIASTRYG DSFDGKTASL CVRRAVYYDP ETGKEDPSKN GVCSNFLCNA
201: KSGDKVKITG PSGKIMLLPE NNPNATHIMI GTGTGVAPFR GYLRRMFMES VPMKFNGLAW LFLGVANTDS LLYDDEFTKY LNDYPGNFRY DRALSREQKN
301: NKGGKMYVQD KIEEYSDEIF KLLDEGAHIY FCGLKGMMPG IQDTLKRVAE ERGESWEQKL SQLKKNKQWH VEVY

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.