CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 4
plasma membrane 2
golgi 2
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02299	Canola	plastid	71.49	45.29
CDY09570	Canola	plastid	71.49	45.29
KRH11782	Soybean	nucleus, plastid	67.36	43.24
KRH36793	Soybean	plastid	66.12	42.44
GSMUA_Achr4P28350_001	Banana	plastid	65.29	42.36
GSMUA_Achr4P31670_001	Banana	plastid	66.12	41.99
VIT_10s0003g04880.t01	Wine grape	plastid	65.29	41.91
Solyc02g024050.2.1	Tomato	extracellular	64.05	41.44
PGSC0003DMT400030830	Potato	extracellular, plastid	64.05	41.44
CDY40011	Canola	cytosol, mitochondrion, peroxisome	40.08	41.28
CDY20886	Canola	mitochondrion, plastid	36.78	41.2
PGSC0003DMT400010484	Potato	plastid	63.64	41.18
CDY46362	Canola	plastid	64.05	41.01
CDY39167	Canola	plastid	64.05	41.01
Os07t0147900-01	Rice	plastid	64.05	41.01
EER90782	Sorghum	plastid	64.05	40.79
TraesCS2A01G252800.1	Wheat	plastid	62.81	40.32
TraesCS2D01G253400.1	Wheat	golgi	62.81	40.21
TraesCS5A01G423000.1	Wheat	plastid	62.4	40.16
Zm00001d034345_P001	Maize	plastid	64.88	40.05
TraesCS5B01G424900.1	Wheat	plastid	61.57	39.95
TraesCS5D01G431300.1	Wheat	plastid	61.98	39.89
OQU88435	Sorghum	plastid	61.98	39.37
HORVU5Hr1G103180.1	Barley	plastid	62.4	39.12
Os03t0784700-01	Rice	plastid	59.92	38.36
Zm00001d018794_P003	Maize	plastid	63.64	38.12
HORVU2Hr1G038830.1	Barley	plastid	62.4	35.12
TraesCS2B01G272500.1	Wheat	plastid	27.27	30.0
CDY18592	Canola	plastid	42.56	28.45
CDX81408	Canola	plastid	42.56	28.37
CDY57601	Canola	plastid	41.74	27.52
CDY43420	Canola	plastid	38.84	25.82
CDY62940	Canola	plastid	39.26	25.61
CDX83730	Canola	plastid	39.67	25.46
CDY55097	Canola	vacuole	38.43	24.54
CDY23149	Canola	endoplasmic reticulum, plastid	13.64	19.76
CDX83820	Canola	endoplasmic reticulum, plasma membrane	11.57	16.18
CDY57760	Canola	plastid	43.8	10.56

Protein Annotations

Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	GO:A0A078IQU2	UniProt:A0A078IQU2	EnsemblPlants:CDY51794
ProteinID:CDY51794	ProteinID:CDY51794.1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00004245001	InterPro:IPR017927
InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	SignalP:SignalP-noTM	UniParc:UPI0004EE2CC1	SEG:seg

Description

BnaC03g75370DBnaC03g75370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQU2]

Coordinates

chrLK033028:-:11445..12722

Molecular Weight (calculated)

27432.9 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.353

Length

242 amino acids

Sequence
(BLAST)

001: MLLLSLFQLV TNVHLQDLSS SHIPLDCVCL IFSFHLSLIS NRRLLSWSSS LALTQKTSKP GAPHNVRLYS IASTRYGDFF DGKTASLCVR RAVYYDPETG
101: KEDPSKNGVC SNFLCDSKPG DKIQITGPSG KVMLLPENDP NVTHIMIATG TGVAPYRGYL RRMFMENLPN YKFGGLDWLF VGVANTDILL YDDEFNKYLK
201: DHPDNFRFDK ALSREQKNKK GGKMYVQDKI EEYSQRTNHV MT

Best Arabidopsis Sequence Match ( AT1G30510.2 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKQN NSISFNSKSW SSSLALNQKT TSIRDGKRYP STTICMSVQQ TSSSKVTVSP IELEDPKDPP LNLYKPKESY
101: TAKIVSVERV VGPKAPGETC HIVIDHDGNL PYWEGQSYGV IPPGENPKKP GAPHNVRLYS IASTRYGDFF DGKTASLCVR RAVYYDPETG KEDPSKNGVC
201: SNFLCDSKPG DKIQITGPSG KVMLLPESDP NATHIMIATG TGVAPYRGYL RRMFMENVPN KTFSGLAWLF LGVANTDSLL YDEEFTKYLK DHPDNFRFDK
301: ALSREEKNKK GGKMYVQDKI EEYSDEIFKL LDNGAHIYFC GLKGMMPGIQ DTLKRVAEER GESWDLKLSQ LRKNKQWHVE VY

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.