CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40011	Canola	cytosol, mitochondrion, peroxisome	74.54	68.51
CDY51794	Canola	plastid	41.2	36.78
TraesCS2B01G272500.1	Wheat	plastid	28.7	28.18
CDY02299	Canola	plastid	44.44	25.13
CDY09570	Canola	plastid	44.44	25.13
VIT_10s0003g04880.t01	Wine grape	plastid	42.13	24.14
PGSC0003DMT400030830	Potato	extracellular, plastid	41.67	24.06
Solyc02g024050.2.1	Tomato	extracellular	41.67	24.06
KRH11782	Soybean	nucleus, plastid	41.2	23.61
KRH36793	Soybean	plastid	41.2	23.61
PGSC0003DMT400010484	Potato	plastid	40.74	23.53
GSMUA_Achr4P31670_001	Banana	plastid	40.74	23.1
GSMUA_Achr4P28350_001	Banana	plastid	39.81	23.06
Os07t0147900-01	Rice	plastid	40.28	23.02
OQU88435	Sorghum	plastid	39.35	22.31
TraesCS2A01G252800.1	Wheat	plastid	38.89	22.28
CDY46362	Canola	plastid	38.89	22.22
TraesCS2D01G253400.1	Wheat	golgi	38.89	22.22
EER90782	Sorghum	plastid	38.89	22.11
CDY39167	Canola	plastid	38.43	21.96
Zm00001d018794_P003	Maize	plastid	40.74	21.78
Zm00001d034345_P001	Maize	plastid	38.89	21.43
TraesCS5B01G424900.1	Wheat	plastid	36.57	21.18
TraesCS5D01G431300.1	Wheat	plastid	36.57	21.01
Os03t0784700-01	Rice	plastid	36.11	20.63
TraesCS5A01G423000.1	Wheat	plastid	35.19	20.21
HORVU5Hr1G103180.1	Barley	plastid	35.19	19.69
HORVU2Hr1G038830.1	Barley	plastid	37.5	18.84
CDY18592	Canola	plastid	26.39	15.75
CDX81408	Canola	plastid	26.39	15.7
CDX83730	Canola	plastid	26.85	15.38
CDY43420	Canola	plastid	25.46	15.11
CDY57601	Canola	plastid	25.0	14.71
CDY62940	Canola	plastid	25.0	14.56
CDY55097	Canola	vacuole	20.37	11.61
CDX83820	Canola	endoplasmic reticulum, plasma membrane	6.02	7.51
CDY57760	Canola	plastid	26.85	5.78
CDY23149	Canola	endoplasmic reticulum, plastid	3.24	4.19

Protein Annotations

EnsemblPlants:CDY20886	EnsemblPlantsGene:GSBRNA2T00013221001	Gene3D:2.40.30.10	GO:A0A078G5Z6	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Riboflavin_synthase-like_b-brl
PANTHER:PTHR43314	PANTHER:PTHR43314:SF6	PRINTS:PR00371	ProteinID:CDY20886	ProteinID:CDY20886.1	SEG:seg
SUPFAM:SSF63380	UniParc:UPI0004EEDE04	UniProt:A0A078G5Z6	MapMan:35.1	:	:

Description

BnaC05g26060DBnaC05g26060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5Z6]

Coordinates

chrLK032113:-:654641..656230

Molecular Weight (calculated)

24151.6 Da

IEP (calculated)

8.362

GRAVY (calculated)

-0.075

Length

216 amino acids

Sequence
(BLAST)

001: MAIIGYEFFI RVPRILSSLT SFWSFYSSYS NTTSNEIEFF FLNEFRAAAV SVSIGNERSL TRSVFKSHSF RLCLLDFLIS SEFDLKPSFA CVVSLFILQH
101: NNSISFNTKS WSSSLALTQK TSKPGAPHNV RLYSIASTRY GDFFDGKAAS LCVRRAVYYD PETGKEDPSK NGVCSNFLCD SNPETRFKSQ VCPSGKVMLL
201: PENDPNATHI MIATGT

Best Arabidopsis Sequence Match ( AT1G30510.1 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKNN SISFNSKSWS SSLALNQKTT SIRDGKRYPS TTICMSVQQT SSSKVTVSPI ELEDPKDPPL NLYKPKESYT
101: AKIVSVERVV GPKAPGETCH IVIDHDGNLP YWEGQSYGVI PPGENPKKPG APHNVRLYSI ASTRYGDFFD GKTASLCVRR AVYYDPETGK EDPSKNGVCS
201: NFLCDSKPGD KIQITGPSGK VMLLPESDPN ATHIMIATGT GVAPYRGYLR RMFMENVPNK TFSGLAWLFL GVANTDSLLY DEEFTKYLKD HPDNFRFDKA
301: LSREEKNKKG GKMYVQDKIE EYSDEIFKLL DNGAHIYFCG LKGMMPGIQD TLKRVAEERG ESWDLKLSQL RKNKQWHVEV Y

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.