Factsheet for TraesCS2D01G253400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G252800.1	Wheat	plastid	97.62	97.88
TraesCS2B01G272500.1	Wheat	plastid	55.29	95.0
Os07t0147900-01	Rice	plastid	84.39	84.39
OQU88435	Sorghum	plastid	83.86	83.2
HORVU2Hr1G038830.1	Barley	plastid	90.21	79.3
KRH11782	Soybean	nucleus, plastid	77.78	77.98
KRH36793	Soybean	plastid	77.25	77.45
GSMUA_Achr4P28350_001	Banana	plastid	75.4	76.41
VIT_10s0003g04880.t01	Wine grape	plastid	75.66	75.86
TraesCS5D01G431300.1	Wheat	plastid	75.13	75.53
Zm00001d018794_P003	Maize	plastid	80.69	75.5
PGSC0003DMT400010484	Potato	plastid	74.6	75.4
Solyc02g024050.2.1	Tomato	extracellular	74.07	74.87
PGSC0003DMT400030830	Potato	extracellular, plastid	74.07	74.87
GSMUA_Achr4P31670_001	Banana	plastid	74.87	74.28
CDY39167	Canola	plastid	73.81	73.81
CDY46362	Canola	plastid	73.55	73.55
Bra029574.1-P	Field mustard	plastid	73.55	73.55
AT1G30510.2	Thale cress	plastid	73.55	72.77
AT4G05390.1	Thale cress	plastid	72.75	72.75
CDY09570	Canola	plastid	72.75	71.99
CDY02299	Canola	plastid	72.49	71.73
Bra032396.1-P	Field mustard	peroxisome, plastid, vacuole	72.49	65.55
CDY51794	Canola	plastid	40.21	62.81
TraesCS6D01G012200.1	Wheat	plastid, unclear	40.48	42.38
TraesCS7D01G016800.1	Wheat	plastid	40.48	42.27
CDY20886	Canola	mitochondrion, plastid	22.22	38.89
CDY40011	Canola	cytosol, mitochondrion, peroxisome	24.07	38.72

Protein Annotations

KEGG:00195+1.18.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.80	MapMan:50.1.17	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361
PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF6	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS2D01G253400	EnsemblPlants:TraesCS2D01G253400.1	TIGR:cd06208	SEG:seg

Description

No Description!

Coordinates

chr2D:+:305864081..305867791

Molecular Weight (calculated)

42192.4 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.578

Length

378 amino acids

Sequence
(BLAST)

001: MASALGAQVA AVAPIGSDGR HYRSCSSLKG NNSCNKSWTG KLAWENKTLQ PRHTKKVFCM YVQQASKSKC KVAIKPLELE NTKEPPLNLY KPKGPYTASI
101: VSVERIVGPK APGETCHIVI DHGGNVPYWE GQSYGVIPPG ENPKKPGAPN TVRLYSIAST RYGDSFDGRT ASLCVRRAVY YDPETGKEDP SKKGICSNFL
201: CDSKPGDKIQ ITGPSGKIML LPEDDPNATH IMIGTGTGVA PFRGYLRRMF MEDVSSFKFG GLAWLFLGVA NTDSLLYDEE FTNYLQQYPE NFRYDKALSR
301: EQKNKSGGKM YVQDKIEEYS DEIFKLLDDG AHIYFCGLKG MMPGIQDTLK RVAEQRGESW HQKLSQLKKN KQWHVEVY

Best Arabidopsis Sequence Match ( AT1G30510.2 )
(BLAST)

001: MSHSAVSQAG AVSVSIENQR SLRRSVFKQN NSISFNSKSW SSSLALNQKT TSIRDGKRYP STTICMSVQQ TSSSKVTVSP IELEDPKDPP LNLYKPKESY
101: TAKIVSVERV VGPKAPGETC HIVIDHDGNL PYWEGQSYGV IPPGENPKKP GAPHNVRLYS IASTRYGDFF DGKTASLCVR RAVYYDPETG KEDPSKNGVC
201: SNFLCDSKPG DKIQITGPSG KVMLLPESDP NATHIMIATG TGVAPYRGYL RRMFMENVPN KTFSGLAWLF LGVANTDSLL YDEEFTKYLK DHPDNFRFDK
301: ALSREEKNKK GGKMYVQDKI EEYSDEIFKL LDNGAHIYFC GLKGMMPGIQ DTLKRVAEER GESWDLKLSQ LRKNKQWHVE VY

Arabidopsis Description

RFNR2Ferredoxin--NADP reductase, root isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.