CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX94134
CDY10819
CDY41285
CDY68977

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	CDX94134	AT4G22890.1	18243102
AT5G66190.1	CDY10819	AT4G22890.1	18243102
AT5G66190.1	CDY41285	AT4G22890.1	18243102
AT5G66190.1	CDY68977	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18592	Canola	plastid	98.62	98.89
AT5G66190.1	Thale cress	plastid	88.98	89.72
KRH69775	Soybean	plastid	83.47	83.7
KRH08061	Soybean	nucleus, plastid	83.47	83.7
KRH28804	Soybean	plastid	82.09	82.32
VIT_04s0023g03510.t01	Wine grape	plastid	81.54	81.77
GSMUA_Achr11P...	Banana	plastid	79.89	81.01
GSMUA_Achr1P02830_001	Banana	plastid	79.61	80.28
Solyc02g062130.2.1	Tomato	plastid	79.61	79.83
PGSC0003DMT400009192	Potato	extracellular	78.79	79.01
EES04249	Sorghum	plastid	76.03	75.0
Zm00001d045575_P001	Maize	plastid	73.28	74.93
EER89050	Sorghum	plastid	74.38	74.79
CDY55097	Canola	vacuole	77.14	73.88
Os06t0107700-01	Rice	plastid	73.0	73.2
Zm00001d011833_P001	Maize	plastid	74.38	73.17
TraesCS6B01G015000.1	Wheat	plastid	73.0	73.0
Solyc02g083810.2.1	Tomato	plastid	74.38	72.97
Os02t0103800-01	Rice	plastid	73.55	72.95
TraesCS6D01G012200.1	Wheat	plastid, unclear	72.18	72.58
TraesCS7D01G016800.1	Wheat	plastid	72.18	72.38
CDY57601	Canola	plastid	73.0	72.21
TraesCS6A01G009200.1	Wheat	plastid	72.18	72.18
TraesCS4A01G472500.1	Wheat	plastid	71.9	72.1
TraesCS7A01G020500.1	Wheat	plastid	71.63	72.02
CDY43420	Canola	plastid	70.25	70.05
CDX83730	Canola	plastid	72.45	69.76
CDY62940	Canola	plastid	71.07	69.54
GSMUA_Achr8P13460_001	Banana	plastid	78.51	67.54
HORVU7Hr1G002210.8	Barley	plastid	66.67	67.22
HORVU6Hr1G000620.2	Barley	plastid	72.45	65.75
Zm00001d042049_P001	Maize	plastid	75.21	56.06
CDX83820	Canola	endoplasmic reticulum, plasma membrane	23.42	49.13
CDY09570	Canola	plastid	45.73	43.46
CDY02299	Canola	plastid	45.73	43.46
CDY39167	Canola	plastid	44.9	43.12
CDY46362	Canola	plastid	44.63	42.86
CDY51794	Canola	plastid	28.37	42.56
CDY23149	Canola	endoplasmic reticulum, plastid	19.28	41.92
CDY57760	Canola	plastid	93.94	33.96
CDY40011	Canola	cytosol, mitochondrion, peroxisome	18.18	28.09
CDY20886	Canola	mitochondrion, plastid	15.7	26.39

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	GO:A0A078D250	EnsemblPlants:CDX81408
ProteinID:CDX81408	ProteinID:CDX81408.1	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00134990001	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361
PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF7	MetaCyc:PWY-101
MetaCyc:PWY-7230	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI0004EE6620	SEG:seg

Description

BnaC09g08190D

Coordinates

chrLK031824:+:1567725..1569829

Molecular Weight (calculated)

40775.0 Da

IEP (calculated)

8.011

GRAVY (calculated)

-0.400

Length

363 amino acids

Sequence
(BLAST)

001: MAAAAIGAAV SYPSSKSSSL PSKTSFVSPQ RIFLNNKSTL CYREACIYRG RVKAQVSTEA PVKVAKESKK QEEGIVVNKF KPKDPYTGRC LLNTRITGDD
101: APGETWHIVF TTEVGEVPYR EGQSIGIIPE GIDKNGKPHK LRLYSIASSA IGDFGDSKTV SLCVKRLVYT NESGEIVKGV CSNFLCDLKP GDEAKITGPV
201: GKEMLMPKDP NATIIMLGTG TGIAPFRSFL WKMFFEEHED YKFNGLAWLF LGVPTSSSLL YKEEFEKMKE KNPENFRLDF AVSREQTNDK GEKMYIQTRM
301: AEYAEELWEL LKKDNTFVYM CGLKGMEKGI DEIMVSLAAK DGIDWLEYKK QLKKSEQWNV EVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.